miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 3' -60.7 NC_002512.2 + 160777 0.66 0.812786
Target:  5'- cGGA-GCggGGCCG-GCGCAGCaGCa- -3'
miRNA:   3'- cCCUgCGa-CCGGCaCGCGUCGcUGau -5'
9211 3' -60.7 NC_002512.2 + 130758 0.66 0.778538
Target:  5'- -cGACGauccGGCCGUGCGCgaucucuuggAGCGGCc- -3'
miRNA:   3'- ccCUGCga--CCGGCACGCG----------UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 49671 0.66 0.778538
Target:  5'- cGGGGCGCgGGCCGgcaGC-CAGUG-Ca- -3'
miRNA:   3'- -CCCUGCGaCCGGCa--CGcGUCGCuGau -5'
9211 3' -60.7 NC_002512.2 + 100049 0.66 0.812785
Target:  5'- cGGGCGCUGagacGCgG-GgGCGGCGGCg- -3'
miRNA:   3'- cCCUGCGAC----CGgCaCgCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 85494 0.66 0.769661
Target:  5'- aGGAucaCGUUGGCCGUGuCGUacucGGUGGCg- -3'
miRNA:   3'- cCCU---GCGACCGGCAC-GCG----UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 152403 0.66 0.769661
Target:  5'- -cGACGCgGGCgagCGUGCGCgggauccccGGCGACg- -3'
miRNA:   3'- ccCUGCGaCCG---GCACGCG---------UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 112713 0.66 0.769661
Target:  5'- cGGGugGUUGaucaggcagaaGCCGUuguacagcacguGCuGCAGCGACUc -3'
miRNA:   3'- -CCCugCGAC-----------CGGCA------------CG-CGUCGCUGAu -5'
9211 3' -60.7 NC_002512.2 + 27571 0.66 0.778538
Target:  5'- aGGaGugGCggagcGGCCcaaaaGCGCGGCGGCa- -3'
miRNA:   3'- -CC-CugCGa----CCGGca---CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 48114 0.66 0.778538
Target:  5'- cGGGCGCUGGaggaCGUGUGgAcgaacGCGGCg- -3'
miRNA:   3'- cCCUGCGACCg---GCACGCgU-----CGCUGau -5'
9211 3' -60.7 NC_002512.2 + 82345 0.66 0.769661
Target:  5'- cGGGuaGCGgUGGgCGUGCGgGGgCGGCg- -3'
miRNA:   3'- -CCC--UGCgACCgGCACGCgUC-GCUGau -5'
9211 3' -60.7 NC_002512.2 + 91388 0.66 0.769662
Target:  5'- -aGACGCUGcGgCGcUGCGUGGCGGCc- -3'
miRNA:   3'- ccCUGCGAC-CgGC-ACGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 191457 0.66 0.782056
Target:  5'- cGGGGCGUugaggugGGCCGagUacgaggcgccggacaGCGCGGCGACc- -3'
miRNA:   3'- -CCCUGCGa------CCGGC--A---------------CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 119967 0.66 0.812786
Target:  5'- -uGGCGCUggGGCCGaacGCGC-GCGACg- -3'
miRNA:   3'- ccCUGCGA--CCGGCa--CGCGuCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 117433 0.66 0.812786
Target:  5'- -uGACGCUGGCCGUGaUGCaccAGaaGCUGu -3'
miRNA:   3'- ccCUGCGACCGGCAC-GCG---UCgcUGAU- -5'
9211 3' -60.7 NC_002512.2 + 113149 0.66 0.804427
Target:  5'- cGGGGCGCcGGCCu--CGCcGCGGCc- -3'
miRNA:   3'- -CCCUGCGaCCGGcacGCGuCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 110091 0.66 0.804427
Target:  5'- -uGGCGCagaGGCCG-GUGCAGCuGCUGu -3'
miRNA:   3'- ccCUGCGa--CCGGCaCGCGUCGcUGAU- -5'
9211 3' -60.7 NC_002512.2 + 104150 0.66 0.804427
Target:  5'- gGGGACGCgacGCCGgacaggaagGCGC-GCGuCUAc -3'
miRNA:   3'- -CCCUGCGac-CGGCa--------CGCGuCGCuGAU- -5'
9211 3' -60.7 NC_002512.2 + 146940 0.66 0.795929
Target:  5'- -cGACcuGCUGGCCGUgaaGCGCGaCGACg- -3'
miRNA:   3'- ccCUG--CGACCGGCA---CGCGUcGCUGau -5'
9211 3' -60.7 NC_002512.2 + 133081 0.66 0.795929
Target:  5'- -aGGCGgUGGguCCGguuggcGCGCAGCGACUc -3'
miRNA:   3'- ccCUGCgACC--GGCa-----CGCGUCGCUGAu -5'
9211 3' -60.7 NC_002512.2 + 217111 0.66 0.787296
Target:  5'- gGGGGCGCc-GCCGaGUccuGCGGCGGCa- -3'
miRNA:   3'- -CCCUGCGacCGGCaCG---CGUCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.