miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 3' -60.7 NC_002512.2 + 23426 1.08 0.001837
Target:  5'- cGGGACGCUGGCCGUGCGCAGCGACUAc -3'
miRNA:   3'- -CCCUGCGACCGGCACGCGUCGCUGAU- -5'
9211 3' -60.7 NC_002512.2 + 111983 0.83 0.101856
Target:  5'- uGGcGCGCUGGCCGUGgaGCAGCGACg- -3'
miRNA:   3'- -CCcUGCGACCGGCACg-CGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 98129 0.76 0.265824
Target:  5'- cGGGGCGCUGGUCGU-CGCGGCcGCc- -3'
miRNA:   3'- -CCCUGCGACCGGCAcGCGUCGcUGau -5'
9211 3' -60.7 NC_002512.2 + 170365 0.75 0.303769
Target:  5'- -cGugGCcagGGCCGUGCGCGGCGccgcGCUGc -3'
miRNA:   3'- ccCugCGa--CCGGCACGCGUCGC----UGAU- -5'
9211 3' -60.7 NC_002512.2 + 101424 0.75 0.31731
Target:  5'- aGGGcACaGCggcGGCCGgcgGCGCGGCGACg- -3'
miRNA:   3'- -CCC-UG-CGa--CCGGCa--CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 5246 0.74 0.368236
Target:  5'- cGGGCGCguaGGCCGagGcCGCGGCGGCg- -3'
miRNA:   3'- cCCUGCGa--CCGGCa-C-GCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 95958 0.73 0.383781
Target:  5'- cGGGGgGCUgaGGcCCGgguugGCGCAGCGGCg- -3'
miRNA:   3'- -CCCUgCGA--CC-GGCa----CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 20860 0.72 0.424496
Target:  5'- cGGGACGC-GGCCGccccgcucaUG-GCGGCGACg- -3'
miRNA:   3'- -CCCUGCGaCCGGC---------ACgCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 109996 0.72 0.432945
Target:  5'- aGGAUGCaGGCCGUGUGgGGCGuCa- -3'
miRNA:   3'- cCCUGCGaCCGGCACGCgUCGCuGau -5'
9211 3' -60.7 NC_002512.2 + 159867 0.72 0.44149
Target:  5'- uGGGGCGCUGGaCCG-GaCGCAGgGGgUGg -3'
miRNA:   3'- -CCCUGCGACC-GGCaC-GCGUCgCUgAU- -5'
9211 3' -60.7 NC_002512.2 + 35979 0.72 0.45013
Target:  5'- cGGGACGCgauccGCCGacCGCGGCGACc- -3'
miRNA:   3'- -CCCUGCGac---CGGCacGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 57860 0.72 0.458862
Target:  5'- uGGGGCGCaugcugccGGCCGgaccgGCGaCGGCGGCg- -3'
miRNA:   3'- -CCCUGCGa-------CCGGCa----CGC-GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 199851 0.71 0.474804
Target:  5'- uGGGACGCUcuccgaucucuaGCCGUucuGUGCGGCGGCUc -3'
miRNA:   3'- -CCCUGCGAc-----------CGGCA---CGCGUCGCUGAu -5'
9211 3' -60.7 NC_002512.2 + 189600 0.71 0.476593
Target:  5'- cGGGACGacguUCGUGCGCGGCGGCc- -3'
miRNA:   3'- -CCCUGCgaccGGCACGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 102133 0.71 0.494656
Target:  5'- gGGGACcCUGGCCGUcuacggccGCGaCcGCGGCUGg -3'
miRNA:   3'- -CCCUGcGACCGGCA--------CGC-GuCGCUGAU- -5'
9211 3' -60.7 NC_002512.2 + 153358 0.71 0.503804
Target:  5'- cGGGuccCGCUGGgC-UGgGCGGCGGCUGg -3'
miRNA:   3'- -CCCu--GCGACCgGcACgCGUCGCUGAU- -5'
9211 3' -60.7 NC_002512.2 + 141283 0.71 0.503804
Target:  5'- -cGACGCcGGCCGcGCGCAcgGCGGCa- -3'
miRNA:   3'- ccCUGCGaCCGGCaCGCGU--CGCUGau -5'
9211 3' -60.7 NC_002512.2 + 121198 0.71 0.522313
Target:  5'- cGGGCGCUGGCCGacaGCGCccucgucgucGGCGGg-- -3'
miRNA:   3'- cCCUGCGACCGGCa--CGCG----------UCGCUgau -5'
9211 3' -60.7 NC_002512.2 + 80858 0.71 0.526047
Target:  5'- cGGGACGCggggcucggugucgGGCgGUcCGCGGCGGCc- -3'
miRNA:   3'- -CCCUGCGa-------------CCGgCAcGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 219506 0.71 0.531667
Target:  5'- aGGAUGCUGGCCG-GCGUu-CGGCa- -3'
miRNA:   3'- cCCUGCGACCGGCaCGCGucGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.