miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 3' -60.7 NC_002512.2 + 3442 0.66 0.795928
Target:  5'- cGGG-GCUGGUCG-GUGaCGGCGACg- -3'
miRNA:   3'- cCCUgCGACCGGCaCGC-GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 5246 0.74 0.368236
Target:  5'- cGGGCGCguaGGCCGagGcCGCGGCGGCg- -3'
miRNA:   3'- cCCUGCGa--CCGGCa-C-GCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 13606 0.7 0.585012
Target:  5'- cGGGAacucgacgaccgaGCUGGCgGUGCG-GGCGGCg- -3'
miRNA:   3'- -CCCUg------------CGACCGgCACGCgUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 15464 0.69 0.63736
Target:  5'- gGGGACGC-GGUCcucggGCGCGGCGcGCUc -3'
miRNA:   3'- -CCCUGCGaCCGGca---CGCGUCGC-UGAu -5'
9211 3' -60.7 NC_002512.2 + 20860 0.72 0.424496
Target:  5'- cGGGACGC-GGCCGccccgcucaUG-GCGGCGACg- -3'
miRNA:   3'- -CCCUGCGaCCGGC---------ACgCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 22988 0.68 0.704874
Target:  5'- cGGGACGCgGGCg--GCGCuGGUGACc- -3'
miRNA:   3'- -CCCUGCGaCCGgcaCGCG-UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 23426 1.08 0.001837
Target:  5'- cGGGACGCUGGCCGUGCGCAGCGACUAc -3'
miRNA:   3'- -CCCUGCGACCGGCACGCGUCGCUGAU- -5'
9211 3' -60.7 NC_002512.2 + 27571 0.66 0.778538
Target:  5'- aGGaGugGCggagcGGCCcaaaaGCGCGGCGGCa- -3'
miRNA:   3'- -CC-CugCGa----CCGGca---CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 28231 0.66 0.804427
Target:  5'- aGGAacCGCggccggGGCCGUcGCGCcGCGAgUAc -3'
miRNA:   3'- cCCU--GCGa-----CCGGCA-CGCGuCGCUgAU- -5'
9211 3' -60.7 NC_002512.2 + 31666 0.68 0.656775
Target:  5'- cGGGCGC-GGCCGUG-GUGGCgGACg- -3'
miRNA:   3'- cCCUGCGaCCGGCACgCGUCG-CUGau -5'
9211 3' -60.7 NC_002512.2 + 35979 0.72 0.45013
Target:  5'- cGGGACGCgauccGCCGacCGCGGCGACc- -3'
miRNA:   3'- -CCCUGCGac---CGGCacGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 39551 0.69 0.608225
Target:  5'- aGGACGCgGGaCgGUGCcaaggGCGGCGACg- -3'
miRNA:   3'- cCCUGCGaCC-GgCACG-----CGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 45415 0.68 0.695335
Target:  5'- cGGGCGCUcgacggcgGcGCCG-GcCGCGGCGACUc -3'
miRNA:   3'- cCCUGCGA--------C-CGGCaC-GCGUCGCUGAu -5'
9211 3' -60.7 NC_002512.2 + 48114 0.66 0.778538
Target:  5'- cGGGCGCUGGaggaCGUGUGgAcgaacGCGGCg- -3'
miRNA:   3'- cCCUGCGACCg---GCACGCgU-----CGCUGau -5'
9211 3' -60.7 NC_002512.2 + 49671 0.66 0.778538
Target:  5'- cGGGGCGCgGGCCGgcaGC-CAGUG-Ca- -3'
miRNA:   3'- -CCCUGCGaCCGGCa--CGcGUCGCuGau -5'
9211 3' -60.7 NC_002512.2 + 52307 0.67 0.751585
Target:  5'- cGGaGACGCUGGC---GCGCauccuGGCGACg- -3'
miRNA:   3'- -CC-CUGCGACCGgcaCGCG-----UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 53317 0.66 0.778538
Target:  5'- cGG-UGCUGGCCGUgaaccggcugGUGaCGGCGGCg- -3'
miRNA:   3'- cCCuGCGACCGGCA----------CGC-GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 57860 0.72 0.458862
Target:  5'- uGGGGCGCaugcugccGGCCGgaccgGCGaCGGCGGCg- -3'
miRNA:   3'- -CCCUGCGa-------CCGGCa----CGC-GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 64560 0.67 0.714359
Target:  5'- cGGGAUGUccccaGGCCGUagccGCaCAGCGACg- -3'
miRNA:   3'- -CCCUGCGa----CCGGCA----CGcGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 65503 0.68 0.704874
Target:  5'- cGGGACGCaugacGGCC-UGCuGCuGGCGGCg- -3'
miRNA:   3'- -CCCUGCGa----CCGGcACG-CG-UCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.