miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 5' -55.1 NC_002512.2 + 150552 0.66 0.97833
Target:  5'- aCGCCGcCGCgAC-CugGGAGggGAg- -3'
miRNA:   3'- -GCGGCaGCGaUGcGugCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 34390 0.66 0.97833
Target:  5'- gGCCG-CGUU-CG-ACGGuGAUGAUGa -3'
miRNA:   3'- gCGGCaGCGAuGCgUGCCuCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 202133 0.66 0.97833
Target:  5'- gCGCCGgucucggcCGCcGC-CGCGGGGcgGGUGg -3'
miRNA:   3'- -GCGGCa-------GCGaUGcGUGCCUCuaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 63446 0.66 0.975993
Target:  5'- gCGCCGUCGCccccggaggACG-GCGGGGAaGAg- -3'
miRNA:   3'- -GCGGCAGCGa--------UGCgUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 215170 0.66 0.975993
Target:  5'- gGCCGUCcuGCUGCuCGgGGAGcgGAc- -3'
miRNA:   3'- gCGGCAG--CGAUGcGUgCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 34895 0.66 0.973477
Target:  5'- cCGCCGUCGCccucuUGCGCcGAGAgGAg- -3'
miRNA:   3'- -GCGGCAGCGau---GCGUGcCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 185504 0.66 0.971879
Target:  5'- aCGCCGg-GCUGCGCGgGGgccugccgcucuucgAGggGGUGg -3'
miRNA:   3'- -GCGGCagCGAUGCGUgCC---------------UCuaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 38068 0.66 0.970775
Target:  5'- gGCCGauUCGCaACGCACGGAucauuAUGGa- -3'
miRNA:   3'- gCGGC--AGCGaUGCGUGCCUc----UACUac -5'
9211 5' -55.1 NC_002512.2 + 121826 0.66 0.967882
Target:  5'- uCGCCGUCGgc-CGgACGGGGggGAg- -3'
miRNA:   3'- -GCGGCAGCgauGCgUGCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 101437 0.66 0.967882
Target:  5'- gGCCGgcggCGCggcgACGCcgagaGCGGGGG-GGUGg -3'
miRNA:   3'- gCGGCa---GCGa---UGCG-----UGCCUCUaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 129207 0.66 0.964791
Target:  5'- cCGCCGcCGCUgGC-CGCGGAGAa---- -3'
miRNA:   3'- -GCGGCaGCGA-UGcGUGCCUCUacuac -5'
9211 5' -55.1 NC_002512.2 + 115029 0.67 0.961497
Target:  5'- gGCCG-CGCUcaGCucgaaGGGGAUGGUGa -3'
miRNA:   3'- gCGGCaGCGAugCGug---CCUCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 31673 0.67 0.961497
Target:  5'- gGCCGUgGUgGCGgACGGGGAgGAg- -3'
miRNA:   3'- gCGGCAgCGaUGCgUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 223711 0.67 0.961496
Target:  5'- gGCCGgCGaCU-CGCACGGGGAgGAc- -3'
miRNA:   3'- gCGGCaGC-GAuGCGUGCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 112464 0.67 0.961496
Target:  5'- aCGCgGUCGC---GCuCGGAGcgGAUGa -3'
miRNA:   3'- -GCGgCAGCGaugCGuGCCUCuaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 18201 0.67 0.957995
Target:  5'- uGCCGcaucaCGUcGCGCACGGuccGGAUGAg- -3'
miRNA:   3'- gCGGCa----GCGaUGCGUGCC---UCUACUac -5'
9211 5' -55.1 NC_002512.2 + 82961 0.67 0.957995
Target:  5'- aGCagGUCGCgGCGCACGGcGcgGAa- -3'
miRNA:   3'- gCGg-CAGCGaUGCGUGCCuCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 121810 0.67 0.957995
Target:  5'- aCGUgGUggacaGC-ACGCACGGGGcgGGUGa -3'
miRNA:   3'- -GCGgCAg----CGaUGCGUGCCUCuaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 117896 0.67 0.957995
Target:  5'- gGcCCGUCGCUGCuccacggccaGCGCGccacgugcGAGAUGAUc -3'
miRNA:   3'- gC-GGCAGCGAUG----------CGUGC--------CUCUACUAc -5'
9211 5' -55.1 NC_002512.2 + 33355 0.67 0.954281
Target:  5'- gGCuCGUCGUcACGCcucgUGGAGAacUGAUGg -3'
miRNA:   3'- gCG-GCAGCGaUGCGu---GCCUCU--ACUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.