Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9211 | 5' | -55.1 | NC_002512.2 | + | 23460 | 1.08 | 0.00712 |
Target: 5'- gCGCCGUCGCUACGCACGGAGAUGAUGc -3' miRNA: 3'- -GCGGCAGCGAUGCGUGCCUCUACUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 83183 | 0.76 | 0.577414 |
Target: 5'- cCGCCGUCGuCUccgucgcccguccGCGCGCGGGGcgGggGg -3' miRNA: 3'- -GCGGCAGC-GA-------------UGCGUGCCUCuaCuaC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 33869 | 0.75 | 0.588281 |
Target: 5'- aGCCGgucccccccuUCGCguccGCGCACGGAGA-GGUGg -3' miRNA: 3'- gCGGC----------AGCGa---UGCGUGCCUCUaCUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 154653 | 0.74 | 0.675769 |
Target: 5'- gGCCG-CGCUcgucaccgcgacgGCGUuaacgcgGCGGAGAUGAUGa -3' miRNA: 3'- gCGGCaGCGA-------------UGCG-------UGCCUCUACUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 112167 | 0.72 | 0.773439 |
Target: 5'- aGCCGgCGCUcgagcccgcACGCGCGGAGcAUGGc- -3' miRNA: 3'- gCGGCaGCGA---------UGCGUGCCUC-UACUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 139259 | 0.72 | 0.773439 |
Target: 5'- gCGCCGggUCGCgccgcccgGCGCGCGGGGgcGAa- -3' miRNA: 3'- -GCGGC--AGCGa-------UGCGUGCCUCuaCUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 25184 | 0.71 | 0.799328 |
Target: 5'- cCGCCGUCGCcgACGUcgcguccgccgcgACGGAGcgGGa- -3' miRNA: 3'- -GCGGCAGCGa-UGCG-------------UGCCUCuaCUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 7758 | 0.71 | 0.8002 |
Target: 5'- aGCCGggGCgguagucgGC-CGCGGAGAUGGUGg -3' miRNA: 3'- gCGGCagCGa-------UGcGUGCCUCUACUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 134138 | 0.71 | 0.817334 |
Target: 5'- gGCCGUCGCgGCGCgcgucccggccgGCGGGGAcGggGa -3' miRNA: 3'- gCGGCAGCGaUGCG------------UGCCUCUaCuaC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 97153 | 0.7 | 0.84182 |
Target: 5'- aCGCCG-CGCUGCGCcuGCGGcAGcgGGc- -3' miRNA: 3'- -GCGGCaGCGAUGCG--UGCC-UCuaCUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 82392 | 0.7 | 0.878942 |
Target: 5'- gGCgGUgGCUccGCGCGCGGGGGagccGGUGg -3' miRNA: 3'- gCGgCAgCGA--UGCGUGCCUCUa---CUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 227680 | 0.7 | 0.871914 |
Target: 5'- gGCUGgcgaCGCUGCGCAacgGGGGAUG-UGg -3' miRNA: 3'- gCGGCa---GCGAUGCGUg--CCUCUACuAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 119217 | 0.69 | 0.903101 |
Target: 5'- uCGCUGUCGaugaucgccaaccugGCGU-CGGAGGUGGUGa -3' miRNA: 3'- -GCGGCAGCga-------------UGCGuGCCUCUACUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 22297 | 0.69 | 0.892368 |
Target: 5'- cCGCCGUCGCagGC-CAgGGAGAgggGAg- -3' miRNA: 3'- -GCGGCAGCGa-UGcGUgCCUCUa--CUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 21527 | 0.69 | 0.910878 |
Target: 5'- uCGUCGUCGaaACGCAccugcuccuCGGGGGUGAg- -3' miRNA: 3'- -GCGGCAGCgaUGCGU---------GCCUCUACUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 36775 | 0.69 | 0.910878 |
Target: 5'- gGCCGgaCGCaGCucuccgGCGCGGAGAUGAa- -3' miRNA: 3'- gCGGCa-GCGaUG------CGUGCCUCUACUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 97441 | 0.69 | 0.910877 |
Target: 5'- gCGCUGUCGCUgGCGCugGGGuucgGAa- -3' miRNA: 3'- -GCGGCAGCGA-UGCGugCCUcua-CUac -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 135197 | 0.69 | 0.910877 |
Target: 5'- aGCUGUCGCacgagggcagcUGCGCGCcGGAGAgcGUGc -3' miRNA: 3'- gCGGCAGCG-----------AUGCGUG-CCUCUacUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 147667 | 0.69 | 0.910878 |
Target: 5'- uCGCgGgggCGCgACG-ACGGGGAUGGUGu -3' miRNA: 3'- -GCGgCa--GCGaUGCgUGCCUCUACUAC- -5' |
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9211 | 5' | -55.1 | NC_002512.2 | + | 189240 | 0.68 | 0.932419 |
Target: 5'- uCGCCGUCGCggACGUcaccguCGGGGA-GAg- -3' miRNA: 3'- -GCGGCAGCGa-UGCGu-----GCCUCUaCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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