miRNA display CGI


Results 21 - 40 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 23579 1.09 0.002283
Target:  5'- gUGGCCGCUGGGCGAGAGCGAACACGAg -3'
miRNA:   3'- -ACCGGCGACCCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130852 0.7 0.647465
Target:  5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 15646 0.7 0.637719
Target:  5'- cGGCCGC-GGGCG---GCGAGCcgACGAg -3'
miRNA:   3'- aCCGGCGaCCCGCucuCGCUUG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 57041 0.69 0.680478
Target:  5'- aGGCCGCguccgacgaccgggGGGCGccGGGCGAACGg-- -3'
miRNA:   3'- aCCGGCGa-------------CCCGCu-CUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 9400 0.7 0.657201
Target:  5'- cGGCCucGCUgcGGGUGAG-GCGGACguagGCGAa -3'
miRNA:   3'- aCCGG--CGA--CCCGCUCuCGCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 2078 0.73 0.485416
Target:  5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3'
miRNA:   3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 2801 0.7 0.61822
Target:  5'- cGGCCgGCggccGGCGGGAcccggcGCGGGCGCGGg -3'
miRNA:   3'- aCCGG-CGac--CCGCUCU------CGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 16019 0.7 0.608482
Target:  5'- cGGCCGCcGGGUGGGGaaGGGCAgCGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUCUcgCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 25206 0.74 0.415763
Target:  5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3'
miRNA:   3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 170406 0.69 0.695887
Target:  5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3'
miRNA:   3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 152805 0.69 0.686269
Target:  5'- aGGuCCGCggcgacGGCGGGcGGCGAGCAgGAu -3'
miRNA:   3'- aCC-GGCGac----CCGCUC-UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 38434 0.7 0.637719
Target:  5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3'
miRNA:   3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 118116 0.72 0.522269
Target:  5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3'
miRNA:   3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 81985 0.71 0.59876
Target:  5'- gUGGCgGCggGGGCGucucgGGGGCGGuCGCGGc -3'
miRNA:   3'- -ACCGgCGa-CCCGC-----UCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 93386 0.7 0.61822
Target:  5'- gGGCCGCaGGGCGcGc-CGAACGCGu -3'
miRNA:   3'- aCCGGCGaCCCGCuCucGCUUGUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.