miRNA display CGI


Results 21 - 40 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 16019 0.7 0.608482
Target:  5'- cGGCCGCcGGGUGGGGaaGGGCAgCGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUCUcgCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 154791 0.71 0.58906
Target:  5'- cUGGCuCGgaGGgaGCGGGAGUGAGCgACGGa -3'
miRNA:   3'- -ACCG-GCgaCC--CGCUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 97317 0.73 0.485416
Target:  5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3'
miRNA:   3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5'
9212 5' -59.5 NC_002512.2 + 110263 0.79 0.225758
Target:  5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3'
miRNA:   3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 127903 0.69 0.666918
Target:  5'- aGGUCGCgaccguggGaGGCGAGGGCGGAU-CGGu -3'
miRNA:   3'- aCCGGCGa-------C-CCGCUCUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 47025 0.7 0.627968
Target:  5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3'
miRNA:   3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 10465 0.71 0.58906
Target:  5'- aGGCCGCcgccgccccGGGCGuGGGCGu-CGCGGc -3'
miRNA:   3'- aCCGGCGa--------CCCGCuCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 11068 0.79 0.210466
Target:  5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3'
miRNA:   3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 74552 0.7 0.61822
Target:  5'- cGGCCGC-GGcGaCGGGAGCGAGguugGCGAg -3'
miRNA:   3'- aCCGGCGaCC-C-GCUCUCGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 24683 0.82 0.146822
Target:  5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3'
miRNA:   3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 116891 0.71 0.58906
Target:  5'- cUGGCgGCgGGGCcGGGGCGGGCuccuCGGa -3'
miRNA:   3'- -ACCGgCGaCCCGcUCUCGCUUGu---GCU- -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 4426 0.71 0.54965
Target:  5'- cGGCUGCUGguagaccGGCGGGGuGCcGGGCGCGGg -3'
miRNA:   3'- aCCGGCGAC-------CCGCUCU-CG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 23337 0.72 0.494518
Target:  5'- gGGCCGCcGGcgguguaCGAGugcGGCGAGCACGAg -3'
miRNA:   3'- aCCGGCGaCCc------GCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 29896 0.73 0.449848
Target:  5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3'
miRNA:   3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 16463 0.69 0.686269
Target:  5'- gGGCCGCcucGGGCGgagacgacAGAGCGuAugGCGc -3'
miRNA:   3'- aCCGGCGa--CCCGC--------UCUCGC-UugUGCu -5'
9212 5' -59.5 NC_002512.2 + 123552 0.69 0.67661
Target:  5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3'
miRNA:   3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5'
9212 5' -59.5 NC_002512.2 + 14485 0.7 0.657201
Target:  5'- gGGCCa--GGGC-AGGGCGAACAUGGu -3'
miRNA:   3'- aCCGGcgaCCCGcUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 38434 0.7 0.637719
Target:  5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3'
miRNA:   3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.