miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 15813 0.66 0.833108
Target:  5'- aGGCCGCcgUGGGacgaGGGgucguagagguagacGGCGGugACGGg -3'
miRNA:   3'- aCCGGCG--ACCCg---CUC---------------UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 16019 0.7 0.608482
Target:  5'- cGGCCGCcGGGUGGGGaaGGGCAgCGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUCUcgCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 16463 0.69 0.686269
Target:  5'- gGGCCGCcucGGGCGgagacgacAGAGCGuAugGCGc -3'
miRNA:   3'- aCCGGCGa--CCCGC--------UCUCGC-UugUGCu -5'
9212 5' -59.5 NC_002512.2 + 19102 0.66 0.829926
Target:  5'- gUGGCCGUUGGcCGuG-GCGAagcGCGCGu -3'
miRNA:   3'- -ACCGGCGACCcGCuCuCGCU---UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 22178 0.68 0.733797
Target:  5'- cGG-CGCU-GGCGAuGGCGAugACGAu -3'
miRNA:   3'- aCCgGCGAcCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 23225 0.66 0.829926
Target:  5'- gUGGugcauCCGCacGGCGAucGGCGAACACGGg -3'
miRNA:   3'- -ACC-----GGCGacCCGCUc-UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 23337 0.72 0.494518
Target:  5'- gGGCCGCcGGcgguguaCGAGugcGGCGAGCACGAg -3'
miRNA:   3'- aCCGGCGaCCc------GCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 23579 1.09 0.002283
Target:  5'- gUGGCCGCUGGGCGAGAGCGAACACGAg -3'
miRNA:   3'- -ACCGGCGACCCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 24683 0.82 0.146822
Target:  5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3'
miRNA:   3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 24851 0.66 0.867685
Target:  5'- cGGCCGgUcGGCG---GCGGACGCGGc -3'
miRNA:   3'- aCCGGCgAcCCGCucuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25206 0.74 0.415763
Target:  5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3'
miRNA:   3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 25415 0.7 0.61822
Target:  5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3'
miRNA:   3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 27977 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGAGAuucCG-GCGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc--GCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 28056 0.67 0.775777
Target:  5'- cGGCCGCggaaggagcccccGGGCGc-GGCGGAgACGGc -3'
miRNA:   3'- aCCGGCGa------------CCCGCucUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 29896 0.73 0.449848
Target:  5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3'
miRNA:   3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 31672 0.67 0.813637
Target:  5'- cGGCCGUgGuGGCGgacGGGGaggaGGACGCGGa -3'
miRNA:   3'- aCCGGCGaC-CCGC---UCUCg---CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 33644 0.67 0.805264
Target:  5'- aGGCgCGCgcGGGCGc-GGCGGACAgGGu -3'
miRNA:   3'- aCCG-GCGa-CCCGCucUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 34939 0.68 0.770425
Target:  5'- gGGUCGCggcgacggGGaGCG-GAGCGGcCGCGAc -3'
miRNA:   3'- aCCGGCGa-------CC-CGCuCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 35281 0.66 0.860496
Target:  5'- cGGCCGCgGcGGCGGaGGCGAuCAUc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.