miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 69 0.68 0.724419
Target:  5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3'
miRNA:   3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 182 0.66 0.860496
Target:  5'- aGGCCGgaGGGCGuGGGCugccCugGc -3'
miRNA:   3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5'
9212 5' -59.5 NC_002512.2 + 202 0.66 0.83783
Target:  5'- gGGCC-C-GGGCgGAGAGgGAGCGgGGa -3'
miRNA:   3'- aCCGGcGaCCCG-CUCUCgCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 2078 0.73 0.485416
Target:  5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3'
miRNA:   3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 2801 0.7 0.61822
Target:  5'- cGGCCgGCggccGGCGGGAcccggcGCGGGCGCGGg -3'
miRNA:   3'- aCCGG-CGac--CCGCUCU------CGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 4221 0.69 0.71497
Target:  5'- cGGCCGCggGGaGCGGGAcGuCGAGCcccgACGGg -3'
miRNA:   3'- aCCGGCGa-CC-CGCUCU-C-GCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 4426 0.71 0.54965
Target:  5'- cGGCUGCUGguagaccGGCGGGGuGCcGGGCGCGGg -3'
miRNA:   3'- aCCGGCGAC-------CCGCUCU-CG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 6321 0.68 0.743094
Target:  5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3'
miRNA:   3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 7374 0.67 0.788099
Target:  5'- cGGCCGCggcGGGCGgccAGGcGCaGAAgGCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGC---UCU-CG-CUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9400 0.7 0.657201
Target:  5'- cGGCCucGCUgcGGGUGAG-GCGGACguagGCGAa -3'
miRNA:   3'- aCCGG--CGA--CCCGCUCuCGCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 9470 0.73 0.485416
Target:  5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3'
miRNA:   3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 9881 0.68 0.743094
Target:  5'- cGGCCucucgacccGCcGGGCGAGGGgGAGCGa-- -3'
miRNA:   3'- aCCGG---------CGaCCCGCUCUCgCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 10465 0.71 0.58906
Target:  5'- aGGCCGCcgccgccccGGGCGuGGGCGu-CGCGGc -3'
miRNA:   3'- aCCGGCGa--------CCCGCuCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 11068 0.79 0.210466
Target:  5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3'
miRNA:   3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 11460 0.69 0.71497
Target:  5'- gGGCCGgggaagGGGCgGAGAccGCGAGgACGAc -3'
miRNA:   3'- aCCGGCga----CCCG-CUCU--CGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 12683 0.66 0.860496
Target:  5'- gGGCCgGCU-GGCGAGGauGCGcaaccuGGCGCGGa -3'
miRNA:   3'- aCCGG-CGAcCCGCUCU--CGC------UUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 12873 0.66 0.860496
Target:  5'- aGGCUGCUgaagccgacgcGGGagaaCGAGAgGCGGGCGCa- -3'
miRNA:   3'- aCCGGCGA-----------CCC----GCUCU-CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 13692 0.68 0.770425
Target:  5'- cGGCCGCgGcGGUGAucaCGGGCGCGAu -3'
miRNA:   3'- aCCGGCGaC-CCGCUcucGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 14485 0.7 0.657201
Target:  5'- gGGCCa--GGGC-AGGGCGAACAUGGu -3'
miRNA:   3'- aCCGGcgaCCCGcUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 15646 0.7 0.637719
Target:  5'- cGGCCGC-GGGCG---GCGAGCcgACGAg -3'
miRNA:   3'- aCCGGCGaCCCGCucuCGCUUG--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.