Results 1 - 20 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 69 | 0.68 | 0.724419 |
Target: 5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3' miRNA: 3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 182 | 0.66 | 0.860496 |
Target: 5'- aGGCCGgaGGGCGuGGGCugccCugGc -3' miRNA: 3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 202 | 0.66 | 0.83783 |
Target: 5'- gGGCC-C-GGGCgGAGAGgGAGCGgGGa -3' miRNA: 3'- aCCGGcGaCCCG-CUCUCgCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 2078 | 0.73 | 0.485416 |
Target: 5'- cGGaguccaCGCcGGGCGGGAGCGGGCgguACGGc -3' miRNA: 3'- aCCg-----GCGaCCCGCUCUCGCUUG---UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 2801 | 0.7 | 0.61822 |
Target: 5'- cGGCCgGCggccGGCGGGAcccggcGCGGGCGCGGg -3' miRNA: 3'- aCCGG-CGac--CCGCUCU------CGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 4221 | 0.69 | 0.71497 |
Target: 5'- cGGCCGCggGGaGCGGGAcGuCGAGCcccgACGGg -3' miRNA: 3'- aCCGGCGa-CC-CGCUCU-C-GCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 4426 | 0.71 | 0.54965 |
Target: 5'- cGGCUGCUGguagaccGGCGGGGuGCcGGGCGCGGg -3' miRNA: 3'- aCCGGCGAC-------CCGCUCU-CG-CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 6321 | 0.68 | 0.743094 |
Target: 5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3' miRNA: 3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 7374 | 0.67 | 0.788099 |
Target: 5'- cGGCCGCggcGGGCGgccAGGcGCaGAAgGCGGc -3' miRNA: 3'- aCCGGCGa--CCCGC---UCU-CG-CUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 9400 | 0.7 | 0.657201 |
Target: 5'- cGGCCucGCUgcGGGUGAG-GCGGACguagGCGAa -3' miRNA: 3'- aCCGG--CGA--CCCGCUCuCGCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 9470 | 0.73 | 0.485416 |
Target: 5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3' miRNA: 3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 9881 | 0.68 | 0.743094 |
Target: 5'- cGGCCucucgacccGCcGGGCGAGGGgGAGCGa-- -3' miRNA: 3'- aCCGG---------CGaCCCGCUCUCgCUUGUgcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 10465 | 0.71 | 0.58906 |
Target: 5'- aGGCCGCcgccgccccGGGCGuGGGCGu-CGCGGc -3' miRNA: 3'- aCCGGCGa--------CCCGCuCUCGCuuGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 11068 | 0.79 | 0.210466 |
Target: 5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3' miRNA: 3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 11460 | 0.69 | 0.71497 |
Target: 5'- gGGCCGgggaagGGGCgGAGAccGCGAGgACGAc -3' miRNA: 3'- aCCGGCga----CCCG-CUCU--CGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 12683 | 0.66 | 0.860496 |
Target: 5'- gGGCCgGCU-GGCGAGGauGCGcaaccuGGCGCGGa -3' miRNA: 3'- aCCGG-CGAcCCGCUCU--CGC------UUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 12873 | 0.66 | 0.860496 |
Target: 5'- aGGCUGCUgaagccgacgcGGGagaaCGAGAgGCGGGCGCa- -3' miRNA: 3'- aCCGGCGA-----------CCC----GCUCU-CGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 13692 | 0.68 | 0.770425 |
Target: 5'- cGGCCGCgGcGGUGAucaCGGGCGCGAu -3' miRNA: 3'- aCCGGCGaC-CCGCUcucGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 14485 | 0.7 | 0.657201 |
Target: 5'- gGGCCa--GGGC-AGGGCGAACAUGGu -3' miRNA: 3'- aCCGGcgaCCCGcUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 15646 | 0.7 | 0.637719 |
Target: 5'- cGGCCGC-GGGCG---GCGAGCcgACGAg -3' miRNA: 3'- aCCGGCGaCCCGCucuCGCUUG--UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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