miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 229605 0.66 0.83783
Target:  5'- gGGCC-C-GGGCgGAGAGgGAGCGgGGa -3'
miRNA:   3'- aCCGGcGaCCCG-CUCUCgCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 229585 0.66 0.860496
Target:  5'- aGGCCGgaGGGCGuGGGCugccCugGc -3'
miRNA:   3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5'
9212 5' -59.5 NC_002512.2 + 229473 0.68 0.724419
Target:  5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3'
miRNA:   3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 228966 0.67 0.805264
Target:  5'- gGGgCGgaGGGCGGGAGacgGAGCA-GAg -3'
miRNA:   3'- aCCgGCgaCCCGCUCUCg--CUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 228487 0.71 0.579389
Target:  5'- gGGaccgaagaCGCggagGGGCGAGAG-GGACGCGGa -3'
miRNA:   3'- aCCg-------GCGa---CCCGCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228210 0.72 0.541101
Target:  5'- aGGCCGCggucgaggccGGGCGAGAcgGCGGGaaggGCGAa -3'
miRNA:   3'- aCCGGCGa---------CCCGCUCU--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 228118 0.71 0.58906
Target:  5'- cGGCCGCaacgucgugcUGGGCGccGA-CGGGCGCGAg -3'
miRNA:   3'- aCCGGCG----------ACCCGCu-CUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228064 0.69 0.666918
Target:  5'- cGGCUGC-GGcGCGGGAGaCGAcgggcugcACACGGu -3'
miRNA:   3'- aCCGGCGaCC-CGCUCUC-GCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 227995 0.69 0.705457
Target:  5'- gGGCCGa-GGGCcGGAGCcggacgGGACGCGGg -3'
miRNA:   3'- aCCGGCgaCCCGcUCUCG------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 227612 0.77 0.277331
Target:  5'- cGGCCGgaGGGCGGGcGGCGGcgGCGAg -3'
miRNA:   3'- aCCGGCgaCCCGCUC-UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 227531 0.67 0.805264
Target:  5'- cGGCgGCggacgggGGGagGAGGGCGggUccGCGAc -3'
miRNA:   3'- aCCGgCGa------CCCg-CUCUCGCuuG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 227097 0.67 0.804419
Target:  5'- cGGCCGCcggccGGGUcgggcucagacggGGGAGCGggUGCa- -3'
miRNA:   3'- aCCGGCGa----CCCG-------------CUCUCGCuuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 226985 0.68 0.752303
Target:  5'- gGGCgGCgucuuagcagaGGGUGAGGcggcGCGAGCugGAg -3'
miRNA:   3'- aCCGgCGa----------CCCGCUCU----CGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 226726 0.67 0.788099
Target:  5'- aGGCCGC-GGGCGAcgacGGCgGGAC-CGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUc---UCG-CUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 226585 0.66 0.845563
Target:  5'- cGGCCaGgaGGGCGcggcccgggggaGGAGgGGACGgCGAc -3'
miRNA:   3'- aCCGG-CgaCCCGC------------UCUCgCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 226235 0.67 0.82186
Target:  5'- cGGCCGCgaggGGGCcGGAG-GAGgAgGAg -3'
miRNA:   3'- aCCGGCGa---CCCGcUCUCgCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 225802 0.7 0.647465
Target:  5'- gGGCCGC-GGGCGGccGGGUGGcCugGGa -3'
miRNA:   3'- aCCGGCGaCCCGCU--CUCGCUuGugCU- -5'
9212 5' -59.5 NC_002512.2 + 224974 0.67 0.788099
Target:  5'- --cCCGCUGGGCGGcGGCGGcgGCGCc- -3'
miRNA:   3'- accGGCGACCCGCUcUCGCU--UGUGcu -5'
9212 5' -59.5 NC_002512.2 + 224151 0.67 0.796749
Target:  5'- aGGCggaCGCgugaggcgGGGCGGGGGC--GCGCGGa -3'
miRNA:   3'- aCCG---GCGa-------CCCGCUCUCGcuUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.