miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 198009 0.66 0.860496
Target:  5'- cGGgCGaCggacggGGGCGAGGgacGCGcGCGCGAg -3'
miRNA:   3'- aCCgGC-Ga-----CCCGCUCU---CGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 106456 0.66 0.867685
Target:  5'- -cGCCuGUcGGGgGAucGCGAACACGAa -3'
miRNA:   3'- acCGG-CGaCCCgCUcuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130589 0.66 0.845563
Target:  5'- aGGCCGCggccucgGaGGCGgaGGAGaCGAagagcccgGCGCGAc -3'
miRNA:   3'- aCCGGCGa------C-CCGC--UCUC-GCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 190014 0.66 0.845563
Target:  5'- uUGGCCGC-GGuCGAG-GCcGACAUGAu -3'
miRNA:   3'- -ACCGGCGaCCcGCUCuCGcUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 226585 0.66 0.845563
Target:  5'- cGGCCaGgaGGGCGcggcccgggggaGGAGgGGACGgCGAc -3'
miRNA:   3'- aCCGG-CgaCCCGC------------UCUCgCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 114258 0.66 0.845563
Target:  5'- cGGCUGCgcgaGGCGAGAauccuCGAacgGCGCGAu -3'
miRNA:   3'- aCCGGCGac--CCGCUCUc----GCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 107726 0.66 0.853121
Target:  5'- aGGUCGCagaggUGGGUGcgguGGcAGCGGACGCa- -3'
miRNA:   3'- aCCGGCG-----ACCCGC----UC-UCGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 220024 0.66 0.853121
Target:  5'- aGGCCGCUccgucucgGGGUccGGGCGAucucgACAUGGc -3'
miRNA:   3'- aCCGGCGA--------CCCGcuCUCGCU-----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 186229 0.66 0.853121
Target:  5'- cGGCCGCcaccgaGGGCGAGGuccCGGuccucgguCACGAg -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc--GCUu-------GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 205054 0.66 0.856093
Target:  5'- cGGCCGC-GGGcCcggaccuacuggcugGAGAGCGGcgGCGAu -3'
miRNA:   3'- aCCGGCGaCCC-G---------------CUCUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 90553 0.66 0.860496
Target:  5'- gGaGCgGgaGGaCGAGGGCGAGgGCGAc -3'
miRNA:   3'- aC-CGgCgaCCcGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 224046 0.66 0.867685
Target:  5'- gGGCCGCcgGGGaCGAcucgucGGGCGucUGCGAc -3'
miRNA:   3'- aCCGGCGa-CCC-GCU------CUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 131999 0.66 0.860496
Target:  5'- gGGCCGCcccGGGCGccGGGgGGACcucgGCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGCu-CUCgCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 133008 0.66 0.860496
Target:  5'- aUGGCCGCcgacggagaacUGGGagaagaCGAcGAGCGAGuCGCGc -3'
miRNA:   3'- -ACCGGCG-----------ACCC------GCU-CUCGCUU-GUGCu -5'
9212 5' -59.5 NC_002512.2 + 108493 0.66 0.860496
Target:  5'- cGGUCGUcaaGGGCGAGGcCGGGCcCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGCUCUcGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 149813 0.66 0.860496
Target:  5'- aUGGUCGaggacagcGaGGCgGAGAGCGAcccGCGCGAc -3'
miRNA:   3'- -ACCGGCga------C-CCG-CUCUCGCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153123 0.66 0.860496
Target:  5'- cGGUgGCgacGGGCGGGAcggGCGAuccggguCGCGGu -3'
miRNA:   3'- aCCGgCGa--CCCGCUCU---CGCUu------GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 137889 0.66 0.860496
Target:  5'- -cGCCGCcGGcgacGCGGGAGaccCGGACGCGGc -3'
miRNA:   3'- acCGGCGaCC----CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 41666 0.66 0.867685
Target:  5'- cGGUCGagagacCUGGGCGAGgaaAGCGAGaaucagGCGGg -3'
miRNA:   3'- aCCGGC------GACCCGCUC---UCGCUUg-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 156438 0.66 0.867685
Target:  5'- cGGCCggGCUGGGgggcucCGGGGGCG-GCGgGGg -3'
miRNA:   3'- aCCGG--CGACCC------GCUCUCGCuUGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.