Results 1 - 20 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 23579 | 1.09 | 0.002283 |
Target: 5'- gUGGCCGCUGGGCGAGAGCGAACACGAg -3' miRNA: 3'- -ACCGGCGACCCGCUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 24683 | 0.82 | 0.146822 |
Target: 5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3' miRNA: 3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 149414 | 0.81 | 0.165806 |
Target: 5'- gGGCCGCgaggggaccGcGGCGGGGGCGGGCGCGGg -3' miRNA: 3'- aCCGGCGa--------C-CCGCUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 110263 | 0.79 | 0.225758 |
Target: 5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3' miRNA: 3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 193448 | 0.79 | 0.215461 |
Target: 5'- cGGCCGCcgGuGGCGGGAGCGGGCccuccgggACGAg -3' miRNA: 3'- aCCGGCGa-C-CCGCUCUCGCUUG--------UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 11068 | 0.79 | 0.210466 |
Target: 5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3' miRNA: 3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 160847 | 0.79 | 0.215461 |
Target: 5'- cGGCggCGCUGGGCGcagucgcagaGGGGCGGACACGu -3' miRNA: 3'- aCCG--GCGACCCGC----------UCUCGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 134530 | 0.78 | 0.247601 |
Target: 5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3' miRNA: 3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 227612 | 0.77 | 0.277331 |
Target: 5'- cGGCCGgaGGGCGGGcGGCGGcgGCGAg -3' miRNA: 3'- aCCGGCgaCCCGCUC-UCGCUugUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 168134 | 0.76 | 0.33356 |
Target: 5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3' miRNA: 3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123123 | 0.76 | 0.330701 |
Target: 5'- -cGCCGC-GGGcCGAGAGCcGGACGCGGa -3' miRNA: 3'- acCGGCGaCCC-GCUCUCG-CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 109793 | 0.75 | 0.37546 |
Target: 5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3' miRNA: 3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 97381 | 0.75 | 0.360094 |
Target: 5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3' miRNA: 3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 131676 | 0.75 | 0.383307 |
Target: 5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3' miRNA: 3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 213635 | 0.75 | 0.383307 |
Target: 5'- uUGGCCGCcgcGGGCGAcGGCGAcgACGAc -3' miRNA: 3'- -ACCGGCGa--CCCGCUcUCGCUugUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 74647 | 0.74 | 0.43261 |
Target: 5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3' miRNA: 3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 105790 | 0.74 | 0.407492 |
Target: 5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3' miRNA: 3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 25206 | 0.74 | 0.415763 |
Target: 5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3' miRNA: 3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 29896 | 0.73 | 0.449848 |
Target: 5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3' miRNA: 3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 228416 | 0.73 | 0.441181 |
Target: 5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3' miRNA: 3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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