miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 23579 1.09 0.002283
Target:  5'- gUGGCCGCUGGGCGAGAGCGAACACGAg -3'
miRNA:   3'- -ACCGGCGACCCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 24683 0.82 0.146822
Target:  5'- gGGCCGCUcGGGCGGGGGUcucgucgaGGACGCGGg -3'
miRNA:   3'- aCCGGCGA-CCCGCUCUCG--------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 149414 0.81 0.165806
Target:  5'- gGGCCGCgaggggaccGcGGCGGGGGCGGGCGCGGg -3'
miRNA:   3'- aCCGGCGa--------C-CCGCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 11068 0.79 0.210466
Target:  5'- gGGCCGCggaGGGCGAGAcggaGCGGACgGCGGu -3'
miRNA:   3'- aCCGGCGa--CCCGCUCU----CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 193448 0.79 0.215461
Target:  5'- cGGCCGCcgGuGGCGGGAGCGGGCccuccgggACGAg -3'
miRNA:   3'- aCCGGCGa-C-CCGCUCUCGCUUG--------UGCU- -5'
9212 5' -59.5 NC_002512.2 + 160847 0.79 0.215461
Target:  5'- cGGCggCGCUGGGCGcagucgcagaGGGGCGGACACGu -3'
miRNA:   3'- aCCG--GCGACCCGC----------UCUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 110263 0.79 0.225758
Target:  5'- aGcGCCGCgcugGGGCGGGAgGCGAGCgGCGAg -3'
miRNA:   3'- aC-CGGCGa---CCCGCUCU-CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 134530 0.78 0.247601
Target:  5'- cGGCguccCGCUGuGGCGAcaGAGCGAGCugGAg -3'
miRNA:   3'- aCCG----GCGAC-CCGCU--CUCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 227612 0.77 0.277331
Target:  5'- cGGCCGgaGGGCGGGcGGCGGcgGCGAg -3'
miRNA:   3'- aCCGGCgaCCCGCUC-UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 123123 0.76 0.330701
Target:  5'- -cGCCGC-GGGcCGAGAGCcGGACGCGGa -3'
miRNA:   3'- acCGGCGaCCC-GCUCUCG-CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 168134 0.76 0.33356
Target:  5'- cGGCCGCggcgagGGGCuggggguggggggcgGAGAGgGGACGCGGc -3'
miRNA:   3'- aCCGGCGa-----CCCG---------------CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 97381 0.75 0.360094
Target:  5'- cGGCgGCcGGaGaCGGGGGCGGGCGCGAc -3'
miRNA:   3'- aCCGgCGaCC-C-GCUCUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 109793 0.75 0.37546
Target:  5'- cGGgCGCcaGGGgGAGGGCGAACAgGAu -3'
miRNA:   3'- aCCgGCGa-CCCgCUCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 213635 0.75 0.383307
Target:  5'- uUGGCCGCcgcGGGCGAcGGCGAcgACGAc -3'
miRNA:   3'- -ACCGGCGa--CCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 131676 0.75 0.383307
Target:  5'- gGGCCGCgaGGGCGGuGAGCccgGAGCGCa- -3'
miRNA:   3'- aCCGGCGa-CCCGCU-CUCG---CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 105790 0.74 0.407492
Target:  5'- aUGGUCGac-GGCGAGGGCGAAgACGGc -3'
miRNA:   3'- -ACCGGCgacCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 25206 0.74 0.415763
Target:  5'- -cGCCGCgacGGaGCGGGAGCGAGCcgccgGCGAu -3'
miRNA:   3'- acCGGCGa--CC-CGCUCUCGCUUG-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 74647 0.74 0.43261
Target:  5'- -cGCCGCgacGGGCGGGAcggccGCGGGCGCGu -3'
miRNA:   3'- acCGGCGa--CCCGCUCU-----CGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 29896 0.73 0.449848
Target:  5'- gGGCCGCUcguccccgccGGGCGc--GCGGACGCGGc -3'
miRNA:   3'- aCCGGCGA----------CCCGCucuCGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.