miRNA display CGI


Results 1 - 20 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 217720 0.66 0.867685
Target:  5'- aGGuCCGCUucagGGGCGGcAGgGAcCGCGAc -3'
miRNA:   3'- aCC-GGCGA----CCCGCUcUCgCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 156438 0.66 0.867685
Target:  5'- cGGCCggGCUGGGgggcucCGGGGGCG-GCGgGGg -3'
miRNA:   3'- aCCGG--CGACCC------GCUCUCGCuUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 41666 0.66 0.867685
Target:  5'- cGGUCGagagacCUGGGCGAGgaaAGCGAGaaucagGCGGg -3'
miRNA:   3'- aCCGGC------GACCCGCUC---UCGCUUg-----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 224046 0.66 0.867685
Target:  5'- gGGCCGCcgGGGaCGAcucgucGGGCGucUGCGAc -3'
miRNA:   3'- aCCGGCGa-CCC-GCU------CUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 106456 0.66 0.867685
Target:  5'- -cGCCuGUcGGGgGAucGCGAACACGAa -3'
miRNA:   3'- acCGG-CGaCCCgCUcuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 24851 0.66 0.867685
Target:  5'- cGGCCGgUcGGCG---GCGGACGCGGc -3'
miRNA:   3'- aCCGGCgAcCCGCucuCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 86260 0.66 0.867685
Target:  5'- gGGCCGaggcGGG-GAGGGaCGAACGCc- -3'
miRNA:   3'- aCCGGCga--CCCgCUCUC-GCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 67496 0.66 0.867685
Target:  5'- cGGUCgGCgucuugGGGCuGGGAGCgGGACACu- -3'
miRNA:   3'- aCCGG-CGa-----CCCG-CUCUCG-CUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 47374 0.66 0.867685
Target:  5'- cGGaCGCUGcGGCGcgcggaggacacGGAGCuGGACGCGc -3'
miRNA:   3'- aCCgGCGAC-CCGC------------UCUCG-CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 48093 0.66 0.865548
Target:  5'- aGGUCGCUgcugacgggcaaccGGGCGcuGGAGgacguguggaCGAACGCGGc -3'
miRNA:   3'- aCCGGCGA--------------CCCGC--UCUC----------GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 182 0.66 0.860496
Target:  5'- aGGCCGgaGGGCGuGGGCugccCugGc -3'
miRNA:   3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5'
9212 5' -59.5 NC_002512.2 + 229585 0.66 0.860496
Target:  5'- aGGCCGgaGGGCGuGGGCugccCugGc -3'
miRNA:   3'- aCCGGCgaCCCGCuCUCGcuu-GugCu -5'
9212 5' -59.5 NC_002512.2 + 140988 0.66 0.860496
Target:  5'- cGGaUCGggGGGCacGGGGGgGAGCGCGGg -3'
miRNA:   3'- aCC-GGCgaCCCG--CUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 12873 0.66 0.860496
Target:  5'- aGGCUGCUgaagccgacgcGGGagaaCGAGAgGCGGGCGCa- -3'
miRNA:   3'- aCCGGCGA-----------CCC----GCUCU-CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 35281 0.66 0.860496
Target:  5'- cGGCCGCgGcGGCGGaGGCGAuCAUc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 90553 0.66 0.860496
Target:  5'- gGaGCgGgaGGaCGAGGGCGAGgGCGAc -3'
miRNA:   3'- aC-CGgCgaCCcGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 198009 0.66 0.860496
Target:  5'- cGGgCGaCggacggGGGCGAGGgacGCGcGCGCGAg -3'
miRNA:   3'- aCCgGC-Ga-----CCCGCUCU---CGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 133008 0.66 0.860496
Target:  5'- aUGGCCGCcgacggagaacUGGGagaagaCGAcGAGCGAGuCGCGc -3'
miRNA:   3'- -ACCGGCG-----------ACCC------GCU-CUCGCUU-GUGCu -5'
9212 5' -59.5 NC_002512.2 + 108493 0.66 0.860496
Target:  5'- cGGUCGUcaaGGGCGAGGcCGGGCcCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGCUCUcGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 153123 0.66 0.860496
Target:  5'- cGGUgGCgacGGGCGGGAcggGCGAuccggguCGCGGu -3'
miRNA:   3'- aCCGgCGa--CCCGCUCU---CGCUu------GUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.