miRNA display CGI


Results 21 - 40 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 228416 0.73 0.441181
Target:  5'- gGGgCGCUgggGGGCGGGGGCGGGaACGGg -3'
miRNA:   3'- aCCgGCGA---CCCGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9470 0.73 0.485416
Target:  5'- cUGGCCGUaggcGGGCGGGcccGCGAGCgGCGGg -3'
miRNA:   3'- -ACCGGCGa---CCCGCUCu--CGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 97317 0.73 0.485416
Target:  5'- cUGGCCGCgcccgccgGGGuCGAGGGCGGAgAggcCGAc -3'
miRNA:   3'- -ACCGGCGa-------CCC-GCUCUCGCUUgU---GCU- -5'
9212 5' -59.5 NC_002512.2 + 201665 0.72 0.490868
Target:  5'- cGGCCGCgguuccuucuucGGCGAGGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac----------CCGCUCUCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 190888 0.72 0.503697
Target:  5'- cGcGUCGCgGGGCGAG-GCGAAC-CGGa -3'
miRNA:   3'- aC-CGGCGaCCCGCUCuCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 23337 0.72 0.494518
Target:  5'- gGGCCGCcGGcgguguaCGAGugcGGCGAGCACGAg -3'
miRNA:   3'- aCCGGCGaCCc------GCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 60751 0.72 0.503697
Target:  5'- cGGCgGCcGGGCGGacGAG-GAGCGCGAc -3'
miRNA:   3'- aCCGgCGaCCCGCU--CUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 95768 0.72 0.522269
Target:  5'- cGGCCGCcuggacggGGGCGuccGAGCGGuaggcgccgggGCGCGGa -3'
miRNA:   3'- aCCGGCGa-------CCCGCu--CUCGCU-----------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228210 0.72 0.541101
Target:  5'- aGGCCGCggucgaggccGGGCGAGAcgGCGGGaaggGCGAa -3'
miRNA:   3'- aCCGGCGa---------CCCGCUCU--CGCUUg---UGCU- -5'
9212 5' -59.5 NC_002512.2 + 118116 0.72 0.522269
Target:  5'- cGGCCguaucGCUgacgggggaggGGGCGGGGGCGGAacCGCGAc -3'
miRNA:   3'- aCCGG-----CGA-----------CCCGCUCUCGCUU--GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 191291 0.71 0.550602
Target:  5'- gGGCgGCgGGGCGGGGGaCGGgggccgggACGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUC-GCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154699 0.71 0.569752
Target:  5'- cGGCCGUccGGCGucGAGCG-GCGCGAc -3'
miRNA:   3'- aCCGGCGacCCGCu-CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 223890 0.71 0.550602
Target:  5'- aGGCCGaggaggaGGaGCGGGAGCG-GCGCGGg -3'
miRNA:   3'- aCCGGCga-----CC-CGCUCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 100966 0.71 0.550602
Target:  5'- aGGUCGCUgucgaGGGCGGGAaagGCGAcCACGu -3'
miRNA:   3'- aCCGGCGA-----CCCGCUCU---CGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 157165 0.71 0.58906
Target:  5'- gGGCCGg-GcGGCGuGGGCGGcgGCGCGAc -3'
miRNA:   3'- aCCGGCgaC-CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 123149 0.71 0.550602
Target:  5'- aGcGCCGCcgGGGcCGAGgaGGCGGACAgGAg -3'
miRNA:   3'- aC-CGGCGa-CCC-GCUC--UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 201346 0.71 0.560154
Target:  5'- gUGGCCGacaucGGGCGGcGGCGGACcCGAc -3'
miRNA:   3'- -ACCGGCga---CCCGCUcUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 121160 0.71 0.58906
Target:  5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 122325 0.71 0.58906
Target:  5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3'
miRNA:   3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5'
9212 5' -59.5 NC_002512.2 + 228118 0.71 0.58906
Target:  5'- cGGCCGCaacgucgugcUGGGCGccGA-CGGGCGCGAg -3'
miRNA:   3'- aCCGGCG----------ACCCGCu-CUcGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.