miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9234 5' -55.1 NC_002512.2 + 117007 0.67 0.940657
Target:  5'- -----cGCaCGCAGGGCgggcgcaagaucaUCGGCGGCCg -3'
miRNA:   3'- gaagaaCG-GCGUCCUG-------------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 54257 0.67 0.940657
Target:  5'- -----aGCgGCAGGGCggcggcgUCGGCGACCc -3'
miRNA:   3'- gaagaaCGgCGUCCUG-------AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 142023 0.67 0.941112
Target:  5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3'
miRNA:   3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 145249 0.67 0.941112
Target:  5'- aCUUCcuggGCCGCcgccuGGA--CGACGACCUg -3'
miRNA:   3'- -GAAGaa--CGGCGu----CCUgaGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 101459 0.67 0.945539
Target:  5'- -----gGCCGCccgcgaggAGGGCUcCGGCGACCc -3'
miRNA:   3'- gaagaaCGGCG--------UCCUGA-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 57177 0.67 0.945539
Target:  5'- ---gUUGCCGCAGGGCaccUCG-CGGCa- -3'
miRNA:   3'- gaagAACGGCGUCCUG---AGCuGCUGga -5'
9234 5' -55.1 NC_002512.2 + 35311 0.67 0.945539
Target:  5'- gCUUCuUUGCuaCGCGacGGACaCGGCGACCg -3'
miRNA:   3'- -GAAG-AACG--GCGU--CCUGaGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 176763 0.67 0.945539
Target:  5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3'
miRNA:   3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5'
9234 5' -55.1 NC_002512.2 + 189970 0.67 0.948088
Target:  5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3'
miRNA:   3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 130656 0.67 0.949742
Target:  5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3'
miRNA:   3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5'
9234 5' -55.1 NC_002512.2 + 22673 0.67 0.949742
Target:  5'- aCUUCgccaCGCAGGACUCGcgcuuccaGACCa -3'
miRNA:   3'- -GAAGaacgGCGUCCUGAGCug------CUGGa -5'
9234 5' -55.1 NC_002512.2 + 74642 0.67 0.949742
Target:  5'- -gUCgacGCCGCGacGGGCggGACGGCCg -3'
miRNA:   3'- gaAGaa-CGGCGU--CCUGagCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 148756 0.67 0.949742
Target:  5'- cCUUCUUcgUGCGcGACuUCGACGACCUg -3'
miRNA:   3'- -GAAGAAcgGCGUcCUG-AGCUGCUGGA- -5'
9234 5' -55.1 NC_002512.2 + 115781 0.67 0.951361
Target:  5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3'
miRNA:   3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 120751 0.67 0.95712
Target:  5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3'
miRNA:   3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 43035 0.67 0.957487
Target:  5'- -gUCgaGgCGCAGGucCUCGGCGACg- -3'
miRNA:   3'- gaAGaaCgGCGUCCu-GAGCUGCUGga -5'
9234 5' -55.1 NC_002512.2 + 97358 0.67 0.957487
Target:  5'- -----cGCCGCccgcggagcgGGGACcgCGGCGGCCg -3'
miRNA:   3'- gaagaaCGGCG----------UCCUGa-GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 196386 0.67 0.957487
Target:  5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3'
miRNA:   3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 44896 0.67 0.957487
Target:  5'- --cCggGCCGCAGcGCucacgUCGACGGCCg -3'
miRNA:   3'- gaaGaaCGGCGUCcUG-----AGCUGCUGGa -5'
9234 5' -55.1 NC_002512.2 + 42046 0.66 0.959993
Target:  5'- -aUCUUGCCGaCGaacuggcuccggacGGuCUgGACGACCa -3'
miRNA:   3'- gaAGAACGGC-GU--------------CCuGAgCUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.