Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 106165 | 0.72 | 0.752275 |
Target: 5'- -gUCUUGCCGUAGG-CguaCGGCGACg- -3' miRNA: 3'- gaAGAACGGCGUCCuGa--GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 106469 | 0.66 | 0.970437 |
Target: 5'- --aCggGCgGCGGGAcCUCGACcGCCUc -3' miRNA: 3'- gaaGaaCGgCGUCCU-GAGCUGcUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 112192 | 0.68 | 0.909763 |
Target: 5'- -----cGCCGCAGGugcgccacgcaGCUCGuCGACCc -3' miRNA: 3'- gaagaaCGGCGUCC-----------UGAGCuGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 112749 | 0.66 | 0.967505 |
Target: 5'- ----gUGCUGCAGcGACUCGaACGccGCCg -3' miRNA: 3'- gaagaACGGCGUC-CUGAGC-UGC--UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115781 | 0.67 | 0.951361 |
Target: 5'- ----gUGCCGUgcuacugcgacgacuGGGACgUCGACGACUa -3' miRNA: 3'- gaagaACGGCG---------------UCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 115880 | 0.68 | 0.926466 |
Target: 5'- -----cGCUGCGGGGC-CGACGGCg- -3' miRNA: 3'- gaagaaCGGCGUCCUGaGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 117007 | 0.67 | 0.940657 |
Target: 5'- -----cGCaCGCAGGGCgggcgcaagaucaUCGGCGGCCg -3' miRNA: 3'- gaagaaCG-GCGUCCUG-------------AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 118608 | 0.7 | 0.831844 |
Target: 5'- -gUCUgGCCGCGGGACgUCGAC-AUCa -3' miRNA: 3'- gaAGAaCGGCGUCCUG-AGCUGcUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 119358 | 0.68 | 0.936458 |
Target: 5'- cCUUCUccGcCCGCGGGAUgguggacgacgCGGCGGCCc -3' miRNA: 3'- -GAAGAa-C-GGCGUCCUGa----------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 120751 | 0.67 | 0.95712 |
Target: 5'- --cCggGCgGCGaguccgacgugcuGGACUCGGCGGCCg -3' miRNA: 3'- gaaGaaCGgCGU-------------CCUGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 121886 | 0.66 | 0.964373 |
Target: 5'- -----gGUCGCGGGggacGCUCGGCGACg- -3' miRNA: 3'- gaagaaCGGCGUCC----UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 121983 | 0.66 | 0.974727 |
Target: 5'- -----cGCCgGCGGGACgagaggaagaucgCGGCGGCCa -3' miRNA: 3'- gaagaaCGG-CGUCCUGa------------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 123224 | 0.66 | 0.969578 |
Target: 5'- -gUCgccGCCcaguGCGGGcucgacuucuucgaGCUCGACGACCg -3' miRNA: 3'- gaAGaa-CGG----CGUCC--------------UGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 124857 | 0.69 | 0.903742 |
Target: 5'- uUUC-UGCuacaugaccugCGCGGGGCUCGACGcGCCc -3' miRNA: 3'- gAAGaACG-----------GCGUCCUGAGCUGC-UGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 129372 | 0.73 | 0.694298 |
Target: 5'- cCUUC-UGUCucguGCGGGuGCUCGACGACCg -3' miRNA: 3'- -GAAGaACGG----CGUCC-UGAGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 130145 | 0.74 | 0.664522 |
Target: 5'- -gUCgcgGCCGCGGGGCcCGGCGGCg- -3' miRNA: 3'- gaAGaa-CGGCGUCCUGaGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 130656 | 0.67 | 0.949742 |
Target: 5'- aCUUCUg--CGCGGGGCUCuccGAgGACCg -3' miRNA: 3'- -GAAGAacgGCGUCCUGAG---CUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 142023 | 0.67 | 0.941112 |
Target: 5'- uCUUCcgcgGCCG-GGGGC-CGGCGACCc -3' miRNA: 3'- -GAAGaa--CGGCgUCCUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 142049 | 0.66 | 0.975724 |
Target: 5'- -----cGCCGCgAGGGCcCGACGcCCg -3' miRNA: 3'- gaagaaCGGCG-UCCUGaGCUGCuGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 144621 | 0.66 | 0.961035 |
Target: 5'- -----cGCCGCGcuGGACgUGGCGGCCa -3' miRNA: 3'- gaagaaCGGCGU--CCUGaGCUGCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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