Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9234 | 5' | -55.1 | NC_002512.2 | + | 226395 | 0.66 | 0.970437 |
Target: 5'- ----cUGCgaCGCAGGAgUCGGCGGCg- -3' miRNA: 3'- gaagaACG--GCGUCCUgAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 225730 | 0.68 | 0.915559 |
Target: 5'- -----aGCCGCGGcGACUCGcucagucggggcGCGGCCg -3' miRNA: 3'- gaagaaCGGCGUC-CUGAGC------------UGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 223792 | 0.66 | 0.970437 |
Target: 5'- -----cGUCGCcgGGGACgucggCGGCGACCg -3' miRNA: 3'- gaagaaCGGCG--UCCUGa----GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219560 | 0.66 | 0.975724 |
Target: 5'- -gUCUUcGCCG-GGGACgugugCGACGGCUc -3' miRNA: 3'- gaAGAA-CGGCgUCCUGa----GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219425 | 0.66 | 0.961035 |
Target: 5'- -----cGCC-CGGGGCggCGGCGGCCUc -3' miRNA: 3'- gaagaaCGGcGUCCUGa-GCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 219126 | 0.66 | 0.973175 |
Target: 5'- -----cGCgGCGGGGC-CGACGACg- -3' miRNA: 3'- gaagaaCGgCGUCCUGaGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 214310 | 0.66 | 0.970437 |
Target: 5'- uCUUCggcgUGCCGCAcgagcaGGC-CGACGACUc -3' miRNA: 3'- -GAAGa---ACGGCGUc-----CUGaGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 213632 | 0.66 | 0.964373 |
Target: 5'- -cUCUUgGCCGCcgcGGGCgacggCGACGACg- -3' miRNA: 3'- gaAGAA-CGGCGu--CCUGa----GCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 213283 | 0.7 | 0.855516 |
Target: 5'- gCUUCaucaGCCGCGuGGC-CGACGACCUc -3' miRNA: 3'- -GAAGaa--CGGCGUcCUGaGCUGCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 205547 | 0.68 | 0.909763 |
Target: 5'- -----aGCUGCAGGGCUUGAacaucaacagccCGACCg -3' miRNA: 3'- gaagaaCGGCGUCCUGAGCU------------GCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 202459 | 0.66 | 0.967505 |
Target: 5'- cCUUUUUuCCGCGGacGCUCGGCGACg- -3' miRNA: 3'- -GAAGAAcGGCGUCc-UGAGCUGCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 196675 | 0.66 | 0.975724 |
Target: 5'- -cUCUgacUGCCgGCGGGACgagCGGC-ACCg -3' miRNA: 3'- gaAGA---ACGG-CGUCCUGa--GCUGcUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 196386 | 0.67 | 0.957487 |
Target: 5'- aCUUCgggacGCCGCgggucuggcgcgGGGACgcggggggCGGCGGCCg -3' miRNA: 3'- -GAAGaa---CGGCG------------UCCUGa-------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 194899 | 0.66 | 0.973175 |
Target: 5'- cCUUCUccuCCGCGGGACgCGA-GGCCc -3' miRNA: 3'- -GAAGAac-GGCGUCCUGaGCUgCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 194387 | 0.74 | 0.674483 |
Target: 5'- -----cGCUGCAGGACUUcugGACGGCCg -3' miRNA: 3'- gaagaaCGGCGUCCUGAG---CUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 189970 | 0.67 | 0.948088 |
Target: 5'- uCUUCgaGCUGCGGGACcgCGucuacaggaagguCGACCUc -3' miRNA: 3'- -GAAGaaCGGCGUCCUGa-GCu------------GCUGGA- -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 188634 | 0.68 | 0.931576 |
Target: 5'- -cUCggGCCGCaAGGGCgccggcggcggCGGCGGCCc -3' miRNA: 3'- gaAGaaCGGCG-UCCUGa----------GCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 176763 | 0.67 | 0.945539 |
Target: 5'- gCUUCggacGCCuGCAGGGCUCGG-GACa- -3' miRNA: 3'- -GAAGaa--CGG-CGUCCUGAGCUgCUGga -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 167749 | 0.69 | 0.89103 |
Target: 5'- -----aGCUGCcGGGCgUCGGCGACCg -3' miRNA: 3'- gaagaaCGGCGuCCUG-AGCUGCUGGa -5' |
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9234 | 5' | -55.1 | NC_002512.2 | + | 158978 | 0.68 | 0.926466 |
Target: 5'- gUUCggcgGCCacgGCGGGGCggaggCGGCGGCCc -3' miRNA: 3'- gAAGaa--CGG---CGUCCUGa----GCUGCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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