miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 122256 0.69 0.741379
Target:  5'- --cGGuCUUCCCCGgcgGCCgCGGGGACGu -3'
miRNA:   3'- guaCCuGGAGGGGC---UGGgGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 3715 0.69 0.741379
Target:  5'- --cGGuCgCUCCCCGggucggacucguACCCCAGGGugGa -3'
miRNA:   3'- guaCCuG-GAGGGGC------------UGGGGUCCUugU- -5'
9235 3' -59 NC_002512.2 + 229417 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 31006 0.69 0.741379
Target:  5'- uCAUGu-UCUCCCUGGCCCUGGGcAACGc -3'
miRNA:   3'- -GUACcuGGAGGGGCUGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 13 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 32165 0.69 0.722662
Target:  5'- --aGGGCCUCCCgcACCCUGGGGucGCGg -3'
miRNA:   3'- guaCCUGGAGGGgcUGGGGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 76841 0.69 0.713194
Target:  5'- aCcgGGACCgcucCCgCCGACCcgaCCGGGGACc -3'
miRNA:   3'- -GuaCCUGGa---GG-GGCUGG---GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 106738 0.69 0.703663
Target:  5'- ----cGCCUCCUCGGCCCCGGcGGCGc -3'
miRNA:   3'- guaccUGGAGGGGCUGGGGUCcUUGU- -5'
9235 3' -59 NC_002512.2 + 108512 0.69 0.73206
Target:  5'- --cGGGCCcggCgCCCGACCggCCGGGGACc -3'
miRNA:   3'- guaCCUGGa--G-GGGCUGG--GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 99038 0.69 0.741379
Target:  5'- --gGGGCCUCgCCCGACCgCCGGu-ACu -3'
miRNA:   3'- guaCCUGGAG-GGGCUGG-GGUCcuUGu -5'
9235 3' -59 NC_002512.2 + 77361 0.69 0.741379
Target:  5'- --cGGaacgccgucGCCgagaCCCCGACCCC-GGAACGc -3'
miRNA:   3'- guaCC---------UGGa---GGGGCUGGGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 106746 0.69 0.741379
Target:  5'- --cGGcGCCgccgCCCCGuCCCCcGGGACGg -3'
miRNA:   3'- guaCC-UGGa---GGGGCuGGGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 94680 0.68 0.768784
Target:  5'- --gGGGCC-CCCCGGCCCgCuGGcgGACGu -3'
miRNA:   3'- guaCCUGGaGGGGCUGGG-GuCC--UUGU- -5'
9235 3' -59 NC_002512.2 + 53869 0.68 0.768784
Target:  5'- --gGGACCg-UCCGuuCCCCAGGGACc -3'
miRNA:   3'- guaCCUGGagGGGCu-GGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 56103 0.68 0.759749
Target:  5'- --gGcGGCCuugUCCUCGugCCCGGGGACc -3'
miRNA:   3'- guaC-CUGG---AGGGGCugGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 73994 0.68 0.750611
Target:  5'- --cGGACUcgUCCCCGcGCCCgccguCGGGGACGa -3'
miRNA:   3'- guaCCUGG--AGGGGC-UGGG-----GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 43526 0.68 0.749692
Target:  5'- aCAU-GACgUCCCCGGCCCCGaagacguugucgcGGAugAc -3'
miRNA:   3'- -GUAcCUGgAGGGGCUGGGGU-------------CCUugU- -5'
9235 3' -59 NC_002512.2 + 131551 0.68 0.75884
Target:  5'- --gGGGCCgccccccuccccgUCCCCGGCCCCgagccccucGGGAAa- -3'
miRNA:   3'- guaCCUGG-------------AGGGGCUGGGG---------UCCUUgu -5'
9235 3' -59 NC_002512.2 + 129342 0.68 0.786514
Target:  5'- --cGGACCUCUgCG-CCCUGGGcAGCGu -3'
miRNA:   3'- guaCCUGGAGGgGCuGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 119354 0.68 0.768784
Target:  5'- --cGGGCCUUCUCcGCCCgCGGGAugGu -3'
miRNA:   3'- guaCCUGGAGGGGcUGGG-GUCCUugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.