miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 53869 0.68 0.768784
Target:  5'- --gGGACCg-UCCGuuCCCCAGGGACc -3'
miRNA:   3'- guaCCUGGagGGGCu-GGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 54012 0.66 0.866443
Target:  5'- aCGUGGACaacaUCCCGGCCuuucccguCCAGGAAg- -3'
miRNA:   3'- -GUACCUGga--GGGGCUGG--------GGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 55463 0.67 0.80374
Target:  5'- cCGUGGuaGCCccgacggaggCCCCGGCgCCgCGGGAACGc -3'
miRNA:   3'- -GUACC--UGGa---------GGGGCUG-GG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 56103 0.68 0.759749
Target:  5'- --gGcGGCCuugUCCUCGugCCCGGGGACc -3'
miRNA:   3'- guaC-CUGG---AGGGGCugGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 62649 0.72 0.567852
Target:  5'- --aGGACCUCucgCCCGAUCCCGcGGAAg- -3'
miRNA:   3'- guaCCUGGAG---GGGCUGGGGU-CCUUgu -5'
9235 3' -59 NC_002512.2 + 68113 0.67 0.8204
Target:  5'- -uUGGACCgaaacCUUCGACCCgcguaccguagCAGGAGCGg -3'
miRNA:   3'- guACCUGGa----GGGGCUGGG-----------GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 69942 0.67 0.844208
Target:  5'- --aGG-UCUCCgguCCGGCCaCCGGGGACGu -3'
miRNA:   3'- guaCCuGGAGG---GGCUGG-GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 70493 0.71 0.616329
Target:  5'- --cGGACCUuccgCCCCGACgCCGcGGGACc -3'
miRNA:   3'- guaCCUGGA----GGGGCUGgGGU-CCUUGu -5'
9235 3' -59 NC_002512.2 + 70529 0.67 0.847267
Target:  5'- --gGGACg-CCCCGACCCCgacgccgauacauaaAGGAcggGCGg -3'
miRNA:   3'- guaCCUGgaGGGGCUGGGG---------------UCCU---UGU- -5'
9235 3' -59 NC_002512.2 + 72757 0.72 0.577488
Target:  5'- --cGGGCCcgCCgCCGACCCCcgacgccgggAGGGACGu -3'
miRNA:   3'- guaCCUGGa-GG-GGCUGGGG----------UCCUUGU- -5'
9235 3' -59 NC_002512.2 + 72810 0.71 0.596861
Target:  5'- cCGUGGgcGCCggcgaCCCCgGACCCCGGGAc-- -3'
miRNA:   3'- -GUACC--UGGa----GGGG-CUGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 73994 0.68 0.750611
Target:  5'- --cGGACUcgUCCCCGcGCCCgccguCGGGGACGa -3'
miRNA:   3'- guaCCUGG--AGGGGC-UGGG-----GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 74748 0.67 0.828501
Target:  5'- aCAccGGCUuguUCCCCGGacgaCCCAGGAGCu -3'
miRNA:   3'- -GUacCUGG---AGGGGCUg---GGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 76841 0.69 0.713194
Target:  5'- aCcgGGACCgcucCCgCCGACCcgaCCGGGGACc -3'
miRNA:   3'- -GuaCCUGGa---GG-GGCUGG---GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 76894 0.68 0.777708
Target:  5'- --gGGACCgcucCCgCCGACCcgaCCGGGGACc -3'
miRNA:   3'- guaCCUGGa---GG-GGCUGG---GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 77270 0.77 0.315177
Target:  5'- --aGaACCUCCCCGGCCCC-GGAGCu -3'
miRNA:   3'- guaCcUGGAGGGGCUGGGGuCCUUGu -5'
9235 3' -59 NC_002512.2 + 77361 0.69 0.741379
Target:  5'- --cGGaacgccgucGCCgagaCCCCGACCCC-GGAACGc -3'
miRNA:   3'- guaCC---------UGGa---GGGGCUGGGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 79374 0.71 0.616329
Target:  5'- gCGUGGaACUgcaCCCCGACCCgCGGGcgGACGa -3'
miRNA:   3'- -GUACC-UGGa--GGGGCUGGG-GUCC--UUGU- -5'
9235 3' -59 NC_002512.2 + 90461 0.67 0.844208
Target:  5'- --cGGGCCagcugcgggUCCCCGAUCaCCGGG-GCGu -3'
miRNA:   3'- guaCCUGG---------AGGGGCUGG-GGUCCuUGU- -5'
9235 3' -59 NC_002512.2 + 94680 0.68 0.768784
Target:  5'- --gGGGCC-CCCCGGCCCgCuGGcgGACGu -3'
miRNA:   3'- guaCCUGGaGGGGCUGGG-GuCC--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.