miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 53869 0.68 0.768784
Target:  5'- --gGGACCg-UCCGuuCCCCAGGGACc -3'
miRNA:   3'- guaCCUGGagGGGCu-GGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 119354 0.68 0.768784
Target:  5'- --cGGGCCUUCUCcGCCCgCGGGAugGu -3'
miRNA:   3'- guaCCUGGAGGGGcUGGG-GUCCUugU- -5'
9235 3' -59 NC_002512.2 + 76894 0.68 0.777708
Target:  5'- --gGGACCgcucCCgCCGACCcgaCCGGGGACc -3'
miRNA:   3'- guaCCUGGa---GG-GGCUGG---GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 129342 0.68 0.786514
Target:  5'- --cGGACCUCUgCG-CCCUGGGcAGCGu -3'
miRNA:   3'- guaCCUGGAGGgGCuGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 3012 0.68 0.795194
Target:  5'- --cGGGCCUUCCUGGCCUCccGGGCc -3'
miRNA:   3'- guaCCUGGAGGGGCUGGGGucCUUGu -5'
9235 3' -59 NC_002512.2 + 2980 0.68 0.795194
Target:  5'- --cGGGCCUCCuuGGCCCCcgcguGGccCGg -3'
miRNA:   3'- guaCCUGGAGGggCUGGGGu----CCuuGU- -5'
9235 3' -59 NC_002512.2 + 55463 0.67 0.80374
Target:  5'- cCGUGGuaGCCccgacggaggCCCCGGCgCCgCGGGAACGc -3'
miRNA:   3'- -GUACC--UGGa---------GGGGCUG-GG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 68113 0.67 0.8204
Target:  5'- -uUGGACCgaaacCUUCGACCCgcguaccguagCAGGAGCGg -3'
miRNA:   3'- guACCUGGa----GGGGCUGGG-----------GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 122838 0.66 0.873478
Target:  5'- aCcgGGACUUCUCCGucggguCCCUcuuccgucGGGAGCGc -3'
miRNA:   3'- -GuaCCUGGAGGGGCu-----GGGG--------UCCUUGU- -5'
9235 3' -59 NC_002512.2 + 47869 0.66 0.866443
Target:  5'- --aGGGCCUUcuaccgccugggCCUGACCCCGaGGACGc -3'
miRNA:   3'- guaCCUGGAG------------GGGCUGGGGUcCUUGU- -5'
9235 3' -59 NC_002512.2 + 106397 0.66 0.866443
Target:  5'- --aGGACCUCCCUcuCCCgcgaCAGGAAg- -3'
miRNA:   3'- guaCCUGGAGGGGcuGGG----GUCCUUgu -5'
9235 3' -59 NC_002512.2 + 54012 0.66 0.866443
Target:  5'- aCGUGGACaacaUCCCGGCCuuucccguCCAGGAAg- -3'
miRNA:   3'- -GUACCUGga--GGGGCUGG--------GGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 117964 0.66 0.866443
Target:  5'- gCGUGGACgCUCCCCGccuggccgugcuGCUCgGGGuGCu -3'
miRNA:   3'- -GUACCUG-GAGGGGC------------UGGGgUCCuUGu -5'
9235 3' -59 NC_002512.2 + 98544 0.66 0.873478
Target:  5'- --gGGACCUCgCCCGGCguuccgcggaUCCGGcGGGCGc -3'
miRNA:   3'- guaCCUGGAG-GGGCUG----------GGGUC-CUUGU- -5'
9235 3' -59 NC_002512.2 + 121241 0.66 0.873478
Target:  5'- uGUGGACCgCCCCGuggguCCCguugcagguCAGGAGgAa -3'
miRNA:   3'- gUACCUGGaGGGGCu----GGG---------GUCCUUgU- -5'
9235 3' -59 NC_002512.2 + 133864 0.66 0.880317
Target:  5'- --aGGACgUCCUggggCGGCUCgAGGAGCGg -3'
miRNA:   3'- guaCCUGgAGGG----GCUGGGgUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 105517 0.66 0.8863
Target:  5'- --gGGGCuCUggcuggaCCCCGGCgCCCGGGggUc -3'
miRNA:   3'- guaCCUG-GA-------GGGGCUG-GGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 130605 0.66 0.884985
Target:  5'- aCGUcGGCCUCCUgcuCGACCCCGcguccggcguccucGGGGCGu -3'
miRNA:   3'- -GUAcCUGGAGGG---GCUGGGGU--------------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 8270 0.66 0.88233
Target:  5'- gGUGGACCcgcUCCcuccucgccguccaCCGACCCCccuccgggucgacGGAGCAg -3'
miRNA:   3'- gUACCUGG---AGG--------------GGCUGGGGu------------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 10537 0.66 0.866443
Target:  5'- --aGGACCUCgCgGACgCCGGGcAGCc -3'
miRNA:   3'- guaCCUGGAGgGgCUGgGGUCC-UUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.