miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 56103 0.68 0.759749
Target:  5'- --gGcGGCCuugUCCUCGugCCCGGGGACc -3'
miRNA:   3'- guaC-CUGG---AGGGGCugGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 122256 0.69 0.741379
Target:  5'- --cGGuCUUCCCCGgcgGCCgCGGGGACGu -3'
miRNA:   3'- guaCCuGGAGGGGC---UGGgGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 2511 0.7 0.694077
Target:  5'- --cGGAUCUCCCCcgacgccggcGGCCCCGGGc--- -3'
miRNA:   3'- guaCCUGGAGGGG----------CUGGGGUCCuugu -5'
9235 3' -59 NC_002512.2 + 121452 0.75 0.405767
Target:  5'- --gGGACCccccggcCCCCGGCCCCGGGcGGCGc -3'
miRNA:   3'- guaCCUGGa------GGGGCUGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 133338 0.67 0.836439
Target:  5'- aAUGGcguCCgggaUCCCCGGCCCCGGcucACAc -3'
miRNA:   3'- gUACCu--GG----AGGGGCUGGGGUCcu-UGU- -5'
9235 3' -59 NC_002512.2 + 3012 0.68 0.795194
Target:  5'- --cGGGCCUUCCUGGCCUCccGGGCc -3'
miRNA:   3'- guaCCUGGAGGGGCUGGGGucCUUGu -5'
9235 3' -59 NC_002512.2 + 229417 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 135223 0.76 0.336318
Target:  5'- --gGGGCC-CCCCGGCCCCGGGc--- -3'
miRNA:   3'- guaCCUGGaGGGGCUGGGGUCCuugu -5'
9235 3' -59 NC_002512.2 + 129342 0.68 0.786514
Target:  5'- --cGGACCUCUgCG-CCCUGGGcAGCGu -3'
miRNA:   3'- guaCCUGGAGGgGCuGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 77270 0.77 0.315177
Target:  5'- --aGaACCUCCCCGGCCCC-GGAGCu -3'
miRNA:   3'- guaCcUGGAGGGGCUGGGGuCCUUGu -5'
9235 3' -59 NC_002512.2 + 3715 0.69 0.741379
Target:  5'- --cGGuCgCUCCCCGggucggacucguACCCCAGGGugGa -3'
miRNA:   3'- guaCCuG-GAGGGGC------------UGGGGUCCUugU- -5'
9235 3' -59 NC_002512.2 + 53869 0.68 0.768784
Target:  5'- --gGGACCg-UCCGuuCCCCAGGGACc -3'
miRNA:   3'- guaCCUGGagGGGCu-GGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 32165 0.69 0.722662
Target:  5'- --aGGGCCUCCCgcACCCUGGGGucGCGg -3'
miRNA:   3'- guaCCUGGAGGGgcUGGGGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 29817 0.7 0.694077
Target:  5'- --cGGGCUUCggcuuCCCGACCCCGaugcacuaucuGGAGCGg -3'
miRNA:   3'- guaCCUGGAG-----GGGCUGGGGU-----------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 72810 0.71 0.596861
Target:  5'- cCGUGGgcGCCggcgaCCCCgGACCCCGGGAc-- -3'
miRNA:   3'- -GUACC--UGGa----GGGG-CUGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 15090 0.72 0.558256
Target:  5'- --cGGACCUCCgCGACCa-GGGGACc -3'
miRNA:   3'- guaCCUGGAGGgGCUGGggUCCUUGu -5'
9235 3' -59 NC_002512.2 + 70529 0.67 0.847267
Target:  5'- --gGGACg-CCCCGACCCCgacgccgauacauaaAGGAcggGCGg -3'
miRNA:   3'- guaCCUGgaGGGGCUGGGG---------------UCCU---UGU- -5'
9235 3' -59 NC_002512.2 + 13573 0.67 0.839567
Target:  5'- gUcgGGGCCgcagaugcaggugaCCCaCGuCCCCGGGAACu -3'
miRNA:   3'- -GuaCCUGGa-------------GGG-GCuGGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 97884 0.67 0.8204
Target:  5'- --aGGuCC-CCCCGGCgCCCGGG-GCGg -3'
miRNA:   3'- guaCCuGGaGGGGCUG-GGGUCCuUGU- -5'
9235 3' -59 NC_002512.2 + 2980 0.68 0.795194
Target:  5'- --cGGGCCUCCuuGGCCCCcgcguGGccCGg -3'
miRNA:   3'- guaCCUGGAGGggCUGGGGu----CCuuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.