miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 42738 1.08 0.002871
Target:  5'- cCAUGGACCUCCCCGACCCCAGGAACAg -3'
miRNA:   3'- -GUACCUGGAGGGGCUGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 229417 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 122256 0.69 0.741379
Target:  5'- --cGGuCUUCCCCGgcgGCCgCGGGGACGu -3'
miRNA:   3'- guaCCuGGAGGGGC---UGGgGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 105517 0.66 0.8863
Target:  5'- --gGGGCuCUggcuggaCCCCGGCgCCCGGGggUc -3'
miRNA:   3'- guaCCUG-GA-------GGGGCUG-GGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 15090 0.72 0.558256
Target:  5'- --cGGACCUCCgCGACCa-GGGGACc -3'
miRNA:   3'- guaCCUGGAGGgGCUGGggUCCUUGu -5'
9235 3' -59 NC_002512.2 + 62649 0.72 0.567852
Target:  5'- --aGGACCUCucgCCCGAUCCCGcGGAAg- -3'
miRNA:   3'- guaCCUGGAG---GGGCUGGGGU-CCUUgu -5'
9235 3' -59 NC_002512.2 + 72810 0.71 0.596861
Target:  5'- cCGUGGgcGCCggcgaCCCCgGACCCCGGGAc-- -3'
miRNA:   3'- -GUACC--UGGa----GGGG-CUGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 79374 0.71 0.616329
Target:  5'- gCGUGGaACUgcaCCCCGACCCgCGGGcgGACGa -3'
miRNA:   3'- -GUACC-UGGa--GGGGCUGGG-GUCC--UUGU- -5'
9235 3' -59 NC_002512.2 + 29817 0.7 0.694077
Target:  5'- --cGGGCUUCggcuuCCCGACCCCGaugcacuaucuGGAGCGg -3'
miRNA:   3'- guaCCUGGAG-----GGGCUGGGGU-----------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 31006 0.69 0.741379
Target:  5'- uCAUGu-UCUCCCUGGCCCUGGGcAACGc -3'
miRNA:   3'- -GUACcuGGAGGGGCUGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 76841 0.69 0.713194
Target:  5'- aCcgGGACCgcucCCgCCGACCcgaCCGGGGACc -3'
miRNA:   3'- -GuaCCUGGa---GG-GGCUGG---GGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 2511 0.7 0.694077
Target:  5'- --cGGAUCUCCCCcgacgccggcGGCCCCGGGc--- -3'
miRNA:   3'- guaCCUGGAGGGG----------CUGGGGUCCuugu -5'
9235 3' -59 NC_002512.2 + 77270 0.77 0.315177
Target:  5'- --aGaACCUCCCCGGCCCC-GGAGCu -3'
miRNA:   3'- guaCcUGGAGGGGCUGGGGuCCUUGu -5'
9235 3' -59 NC_002512.2 + 32165 0.69 0.722662
Target:  5'- --aGGGCCUCCCgcACCCUGGGGucGCGg -3'
miRNA:   3'- guaCCUGGAGGGgcUGGGGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 135223 0.76 0.336318
Target:  5'- --gGGGCC-CCCCGGCCCCGGGc--- -3'
miRNA:   3'- guaCCUGGaGGGGCUGGGGUCCuugu -5'
9235 3' -59 NC_002512.2 + 70493 0.71 0.616329
Target:  5'- --cGGACCUuccgCCCCGACgCCGcGGGACc -3'
miRNA:   3'- guaCCUGGA----GGGGCUGgGGU-CCUUGu -5'
9235 3' -59 NC_002512.2 + 13 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 3715 0.69 0.741379
Target:  5'- --cGGuCgCUCCCCGggucggacucguACCCCAGGGugGa -3'
miRNA:   3'- guaCCuG-GAGGGGC------------UGGGGUCCUugU- -5'
9235 3' -59 NC_002512.2 + 121452 0.75 0.405767
Target:  5'- --gGGACCccccggcCCCCGGCCCCGGGcGGCGc -3'
miRNA:   3'- guaCCUGGa------GGGGCUGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 72757 0.72 0.577488
Target:  5'- --cGGGCCcgCCgCCGACCCCcgacgccgggAGGGACGu -3'
miRNA:   3'- guaCCUGGa-GG-GGCUGGGG----------UCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.