miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 113498 0.66 0.866443
Target:  5'- --aGGGCga-CCCG-CCCCGGGGACc -3'
miRNA:   3'- guaCCUGgagGGGCuGGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 44224 0.66 0.851803
Target:  5'- --aGGACUucaggaUCCCCGcgacgucCCCCAGGAGg- -3'
miRNA:   3'- guaCCUGG------AGGGGCu------GGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 226493 0.66 0.851803
Target:  5'- cCGUGGuCCUCUggggaccugUgGGCCCCGcGGAGCGg -3'
miRNA:   3'- -GUACCuGGAGG---------GgCUGGGGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 25121 0.66 0.851803
Target:  5'- --cGGuCgUCCCCGcGCCCCAGGccgggaucgcugAGCAc -3'
miRNA:   3'- guaCCuGgAGGGGC-UGGGGUCC------------UUGU- -5'
9235 3' -59 NC_002512.2 + 105517 0.66 0.8863
Target:  5'- --gGGGCuCUggcuggaCCCCGGCgCCCGGGggUc -3'
miRNA:   3'- guaCCUG-GA-------GGGGCUG-GGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 180019 0.66 0.85479
Target:  5'- --gGGACUcgaucacgcucgggaUCUCCGAUCCCAGGcgguGCGg -3'
miRNA:   3'- guaCCUGG---------------AGGGGCUGGGGUCCu---UGU- -5'
9235 3' -59 NC_002512.2 + 226286 0.66 0.859216
Target:  5'- --cGGGCUcugcgccugUCCCCGAgacCCCCGGGGc-- -3'
miRNA:   3'- guaCCUGG---------AGGGGCU---GGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 211829 0.66 0.859216
Target:  5'- ---cGACUUCCUgGACCCCGGGcuCu -3'
miRNA:   3'- guacCUGGAGGGgCUGGGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 221820 0.66 0.859216
Target:  5'- --aGGAgCUCgucucggcgUCCGACCCgCGGGGGCGc -3'
miRNA:   3'- guaCCUgGAG---------GGGCUGGG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 174534 0.66 0.859216
Target:  5'- --cGGuCCUCCUgGAUCgagaaCCAGGAGCGu -3'
miRNA:   3'- guaCCuGGAGGGgCUGG-----GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 98104 0.66 0.866443
Target:  5'- -uUGGucGCCUUCCCG-CCCCGcuugccGGGGCGc -3'
miRNA:   3'- guACC--UGGAGGGGCuGGGGU------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 189964 0.66 0.886955
Target:  5'- --cGGACCUCUUCGAgCUgCGGGAccGCGu -3'
miRNA:   3'- guaCCUGGAGGGGCU-GGgGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 95998 0.66 0.871388
Target:  5'- cCcgGGACCgccggccgagccgcUCCUCGagccGCCCCAGGAc-- -3'
miRNA:   3'- -GuaCCUGG--------------AGGGGC----UGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 211864 0.66 0.873478
Target:  5'- --aGGACCUCagcaucgUCGGCgCCCuGGAGCGg -3'
miRNA:   3'- guaCCUGGAGg------GGCUG-GGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 224074 0.66 0.873478
Target:  5'- -cUGcGACCUCUCCacggagGACCUCAGGGGg- -3'
miRNA:   3'- guAC-CUGGAGGGG------CUGGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 128429 0.66 0.880317
Target:  5'- --cGGAgcCCUCCUCGcgggcggccaugGCCCagCAGGAACAg -3'
miRNA:   3'- guaCCU--GGAGGGGC------------UGGG--GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 222985 0.66 0.880317
Target:  5'- --cGGuCUUCCUCGACCugCCGgGGAGCGg -3'
miRNA:   3'- guaCCuGGAGGGGCUGG--GGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 95161 0.66 0.8863
Target:  5'- --aGGACCggagccuUCCCCacGGcCCCCAGGAugucggGCAg -3'
miRNA:   3'- guaCCUGG-------AGGGG--CU-GGGGUCCU------UGU- -5'
9235 3' -59 NC_002512.2 + 98589 0.66 0.886955
Target:  5'- --aGGAUCUUCCCGACCUCccGcGCGu -3'
miRNA:   3'- guaCCUGGAGGGGCUGGGGucCuUGU- -5'
9235 3' -59 NC_002512.2 + 201804 0.66 0.886955
Target:  5'- --gGcGACCUCUCCGccgucuccgccGCgCCCGGGGGCu -3'
miRNA:   3'- guaC-CUGGAGGGGC-----------UG-GGGUCCUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.