Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9235 | 3' | -59 | NC_002512.2 | + | 42738 | 1.08 | 0.002871 |
Target: 5'- cCAUGGACCUCCCCGACCCCAGGAACAg -3' miRNA: 3'- -GUACCUGGAGGGGCUGGGGUCCUUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 77270 | 0.77 | 0.315177 |
Target: 5'- --aGaACCUCCCCGGCCCC-GGAGCu -3' miRNA: 3'- guaCcUGGAGGGGCUGGGGuCCUUGu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 135223 | 0.76 | 0.336318 |
Target: 5'- --gGGGCC-CCCCGGCCCCGGGc--- -3' miRNA: 3'- guaCCUGGaGGGGCUGGGGUCCuugu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 121452 | 0.75 | 0.405767 |
Target: 5'- --gGGACCccccggcCCCCGGCCCCGGGcGGCGc -3' miRNA: 3'- guaCCUGGa------GGGGCUGGGGUCC-UUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 147425 | 0.73 | 0.48357 |
Target: 5'- -cUGGGCCccuUCCCCGcCUUCGGGAGCGg -3' miRNA: 3'- guACCUGG---AGGGGCuGGGGUCCUUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 15090 | 0.72 | 0.558256 |
Target: 5'- --cGGACCUCCgCGACCa-GGGGACc -3' miRNA: 3'- guaCCUGGAGGgGCUGGggUCCUUGu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 131995 | 0.72 | 0.558256 |
Target: 5'- gCGUGGGCCgCCCCGGgCgCCGGGGGg- -3' miRNA: 3'- -GUACCUGGaGGGGCUgG-GGUCCUUgu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 62649 | 0.72 | 0.567852 |
Target: 5'- --aGGACCUCucgCCCGAUCCCGcGGAAg- -3' miRNA: 3'- guaCCUGGAG---GGGCUGGGGU-CCUUgu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 72757 | 0.72 | 0.577488 |
Target: 5'- --cGGGCCcgCCgCCGACCCCcgacgccgggAGGGACGu -3' miRNA: 3'- guaCCUGGa-GG-GGCUGGGG----------UCCUUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 72810 | 0.71 | 0.596861 |
Target: 5'- cCGUGGgcGCCggcgaCCCCgGACCCCGGGAc-- -3' miRNA: 3'- -GUACC--UGGa----GGGG-CUGGGGUCCUugu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 79374 | 0.71 | 0.616329 |
Target: 5'- gCGUGGaACUgcaCCCCGACCCgCGGGcgGACGa -3' miRNA: 3'- -GUACC-UGGa--GGGGCUGGG-GUCC--UUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 70493 | 0.71 | 0.616329 |
Target: 5'- --cGGACCUuccgCCCCGACgCCGcGGGACc -3' miRNA: 3'- guaCCUGGA----GGGGCUGgGGU-CCUUGu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 107624 | 0.71 | 0.635839 |
Target: 5'- --aGGACgUCCCCGcgGCCgCCGGGGAa- -3' miRNA: 3'- guaCCUGgAGGGGC--UGG-GGUCCUUgu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 98215 | 0.7 | 0.674771 |
Target: 5'- --gGGACCUUCCCGAgcaguCUCCGGGuGCu -3' miRNA: 3'- guaCCUGGAGGGGCU-----GGGGUCCuUGu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 142336 | 0.7 | 0.684443 |
Target: 5'- gAUGGAaaccgcCCUCCUgGACCUCAGGGuCGa -3' miRNA: 3'- gUACCU------GGAGGGgCUGGGGUCCUuGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 113295 | 0.7 | 0.684443 |
Target: 5'- --cGGGCCUCCCgCccucGCCCCAGGugUAg -3' miRNA: 3'- guaCCUGGAGGG-Gc---UGGGGUCCuuGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 99412 | 0.7 | 0.684443 |
Target: 5'- --cGGAUCgggCCCCGACcgaCCCAGGAc-- -3' miRNA: 3'- guaCCUGGa--GGGGCUG---GGGUCCUugu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 29817 | 0.7 | 0.694077 |
Target: 5'- --cGGGCUUCggcuuCCCGACCCCGaugcacuaucuGGAGCGg -3' miRNA: 3'- guaCCUGGAG-----GGGCUGGGGU-----------CCUUGU- -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 2511 | 0.7 | 0.694077 |
Target: 5'- --cGGAUCUCCCCcgacgccggcGGCCCCGGGc--- -3' miRNA: 3'- guaCCUGGAGGGG----------CUGGGGUCCuugu -5' |
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9235 | 3' | -59 | NC_002512.2 | + | 194833 | 0.7 | 0.694077 |
Target: 5'- cCGUGGugCUgUCCCGGCCCguGcGGACc -3' miRNA: 3'- -GUACCugGA-GGGGCUGGGguC-CUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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