miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 214202 0.66 0.886955
Target:  5'- --aGGACCcgcugCgCCCGcuGCCCCGGGAc-- -3'
miRNA:   3'- guaCCUGGa----G-GGGC--UGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 201804 0.66 0.886955
Target:  5'- --gGcGACCUCUCCGccgucuccgccGCgCCCGGGGGCu -3'
miRNA:   3'- guaC-CUGGAGGGGC-----------UG-GGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 98589 0.66 0.886955
Target:  5'- --aGGAUCUUCCCGACCUCccGcGCGu -3'
miRNA:   3'- guaCCUGGAGGGGCUGGGGucCuUGU- -5'
9235 3' -59 NC_002512.2 + 189964 0.66 0.886955
Target:  5'- --cGGACCUCUUCGAgCUgCGGGAccGCGu -3'
miRNA:   3'- guaCCUGGAGGGGCU-GGgGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 95161 0.66 0.8863
Target:  5'- --aGGACCggagccuUCCCCacGGcCCCCAGGAugucggGCAg -3'
miRNA:   3'- guaCCUGG-------AGGGG--CU-GGGGUCCU------UGU- -5'
9235 3' -59 NC_002512.2 + 105517 0.66 0.8863
Target:  5'- --gGGGCuCUggcuggaCCCCGGCgCCCGGGggUc -3'
miRNA:   3'- guaCCUG-GA-------GGGGCUG-GGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 130605 0.66 0.884985
Target:  5'- aCGUcGGCCUCCUgcuCGACCCCGcguccggcguccucGGGGCGu -3'
miRNA:   3'- -GUAcCUGGAGGG---GCUGGGGU--------------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 8270 0.66 0.88233
Target:  5'- gGUGGACCcgcUCCcuccucgccguccaCCGACCCCccuccgggucgacGGAGCAg -3'
miRNA:   3'- gUACCUGG---AGG--------------GGCUGGGGu------------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 222985 0.66 0.880317
Target:  5'- --cGGuCUUCCUCGACCugCCGgGGAGCGg -3'
miRNA:   3'- guaCCuGGAGGGGCUGG--GGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 128429 0.66 0.880317
Target:  5'- --cGGAgcCCUCCUCGcgggcggccaugGCCCagCAGGAACAg -3'
miRNA:   3'- guaCCU--GGAGGGGC------------UGGG--GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 133864 0.66 0.880317
Target:  5'- --aGGACgUCCUggggCGGCUCgAGGAGCGg -3'
miRNA:   3'- guaCCUGgAGGG----GCUGGGgUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 118214 0.66 0.880317
Target:  5'- -cUGGugCgacggggCCCuCGugCUCGGGGACGg -3'
miRNA:   3'- guACCugGa------GGG-GCugGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 6846 0.66 0.880317
Target:  5'- --gGGcACCUCCCgGACCUCGccGGAGu- -3'
miRNA:   3'- guaCC-UGGAGGGgCUGGGGU--CCUUgu -5'
9235 3' -59 NC_002512.2 + 121241 0.66 0.873478
Target:  5'- uGUGGACCgCCCCGuggguCCCguugcagguCAGGAGgAa -3'
miRNA:   3'- gUACCUGGaGGGGCu----GGG---------GUCCUUgU- -5'
9235 3' -59 NC_002512.2 + 98544 0.66 0.873478
Target:  5'- --gGGACCUCgCCCGGCguuccgcggaUCCGGcGGGCGc -3'
miRNA:   3'- guaCCUGGAG-GGGCUG----------GGGUC-CUUGU- -5'
9235 3' -59 NC_002512.2 + 122838 0.66 0.873478
Target:  5'- aCcgGGACUUCUCCGucggguCCCUcuuccgucGGGAGCGc -3'
miRNA:   3'- -GuaCCUGGAGGGGCu-----GGGG--------UCCUUGU- -5'
9235 3' -59 NC_002512.2 + 211864 0.66 0.873478
Target:  5'- --aGGACCUCagcaucgUCGGCgCCCuGGAGCGg -3'
miRNA:   3'- guaCCUGGAGg------GGCUG-GGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 224074 0.66 0.873478
Target:  5'- -cUGcGACCUCUCCacggagGACCUCAGGGGg- -3'
miRNA:   3'- guAC-CUGGAGGGG------CUGGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 95998 0.66 0.871388
Target:  5'- cCcgGGACCgccggccgagccgcUCCUCGagccGCCCCAGGAc-- -3'
miRNA:   3'- -GuaCCUGG--------------AGGGGC----UGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 98104 0.66 0.866443
Target:  5'- -uUGGucGCCUUCCCG-CCCCGcuugccGGGGCGc -3'
miRNA:   3'- guACC--UGGAGGGGCuGGGGU------CCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.