miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 98104 0.66 0.866443
Target:  5'- -uUGGucGCCUUCCCG-CCCCGcuugccGGGGCGc -3'
miRNA:   3'- guACC--UGGAGGGGCuGGGGU------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 117964 0.66 0.866443
Target:  5'- gCGUGGACgCUCCCCGccuggccgugcuGCUCgGGGuGCu -3'
miRNA:   3'- -GUACCUG-GAGGGGC------------UGGGgUCCuUGu -5'
9235 3' -59 NC_002512.2 + 54012 0.66 0.866443
Target:  5'- aCGUGGACaacaUCCCGGCCuuucccguCCAGGAAg- -3'
miRNA:   3'- -GUACCUGga--GGGGCUGG--------GGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 106397 0.66 0.866443
Target:  5'- --aGGACCUCCCUcuCCCgcgaCAGGAAg- -3'
miRNA:   3'- guaCCUGGAGGGGcuGGG----GUCCUUgu -5'
9235 3' -59 NC_002512.2 + 47869 0.66 0.866443
Target:  5'- --aGGGCCUUcuaccgccugggCCUGACCCCGaGGACGc -3'
miRNA:   3'- guaCCUGGAG------------GGGCUGGGGUcCUUGU- -5'
9235 3' -59 NC_002512.2 + 10537 0.66 0.866443
Target:  5'- --aGGACCUCgCgGACgCCGGGcAGCc -3'
miRNA:   3'- guaCCUGGAGgGgCUGgGGUCC-UUGu -5'
9235 3' -59 NC_002512.2 + 221820 0.66 0.859216
Target:  5'- --aGGAgCUCgucucggcgUCCGACCCgCGGGGGCGc -3'
miRNA:   3'- guaCCUgGAG---------GGGCUGGG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 229595 0.66 0.859216
Target:  5'- gCGUGGGCUgCCCUGGCCCCccGucGCGc -3'
miRNA:   3'- -GUACCUGGaGGGGCUGGGGucCu-UGU- -5'
9235 3' -59 NC_002512.2 + 192 0.66 0.859216
Target:  5'- gCGUGGGCUgCCCUGGCCCCccGucGCGc -3'
miRNA:   3'- -GUACCUGGaGGGGCUGGGGucCu-UGU- -5'
9235 3' -59 NC_002512.2 + 174534 0.66 0.859216
Target:  5'- --cGGuCCUCCUgGAUCgagaaCCAGGAGCGu -3'
miRNA:   3'- guaCCuGGAGGGgCUGG-----GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 211829 0.66 0.859216
Target:  5'- ---cGACUUCCUgGACCCCGGGcuCu -3'
miRNA:   3'- guacCUGGAGGGgCUGGGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 226286 0.66 0.859216
Target:  5'- --cGGGCUcugcgccugUCCCCGAgacCCCCGGGGc-- -3'
miRNA:   3'- guaCCUGG---------AGGGGCU---GGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 180019 0.66 0.85479
Target:  5'- --gGGACUcgaucacgcucgggaUCUCCGAUCCCAGGcgguGCGg -3'
miRNA:   3'- guaCCUGG---------------AGGGGCUGGGGUCCu---UGU- -5'
9235 3' -59 NC_002512.2 + 226493 0.66 0.851803
Target:  5'- cCGUGGuCCUCUggggaccugUgGGCCCCGcGGAGCGg -3'
miRNA:   3'- -GUACCuGGAGG---------GgCUGGGGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 25121 0.66 0.851803
Target:  5'- --cGGuCgUCCCCGcGCCCCAGGccgggaucgcugAGCAc -3'
miRNA:   3'- guaCCuGgAGGGGC-UGGGGUCC------------UUGU- -5'
9235 3' -59 NC_002512.2 + 44224 0.66 0.851803
Target:  5'- --aGGACUucaggaUCCCCGcgacgucCCCCAGGAGg- -3'
miRNA:   3'- guaCCUGG------AGGGGCu------GGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 70529 0.67 0.847267
Target:  5'- --gGGACg-CCCCGACCCCgacgccgauacauaaAGGAcggGCGg -3'
miRNA:   3'- guaCCUGgaGGGGCUGGGG---------------UCCU---UGU- -5'
9235 3' -59 NC_002512.2 + 43063 0.67 0.844208
Target:  5'- --aGGGCCUCgCCGAggcaccggUCCCGGGGcGCGg -3'
miRNA:   3'- guaCCUGGAGgGGCU--------GGGGUCCU-UGU- -5'
9235 3' -59 NC_002512.2 + 69942 0.67 0.844208
Target:  5'- --aGG-UCUCCgguCCGGCCaCCGGGGACGu -3'
miRNA:   3'- guaCCuGGAGG---GGCUGG-GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 224381 0.67 0.844208
Target:  5'- uCcgGGACCUCg-CGACCCCGGcgcGGACGc -3'
miRNA:   3'- -GuaCCUGGAGggGCUGGGGUC---CUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.