miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 13 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 192 0.66 0.859216
Target:  5'- gCGUGGGCUgCCCUGGCCCCccGucGCGc -3'
miRNA:   3'- -GUACCUGGaGGGGCUGGGGucCu-UGU- -5'
9235 3' -59 NC_002512.2 + 2511 0.7 0.694077
Target:  5'- --cGGAUCUCCCCcgacgccggcGGCCCCGGGc--- -3'
miRNA:   3'- guaCCUGGAGGGG----------CUGGGGUCCuugu -5'
9235 3' -59 NC_002512.2 + 2980 0.68 0.795194
Target:  5'- --cGGGCCUCCuuGGCCCCcgcguGGccCGg -3'
miRNA:   3'- guaCCUGGAGGggCUGGGGu----CCuuGU- -5'
9235 3' -59 NC_002512.2 + 3012 0.68 0.795194
Target:  5'- --cGGGCCUUCCUGGCCUCccGGGCc -3'
miRNA:   3'- guaCCUGGAGGGGCUGGGGucCUUGu -5'
9235 3' -59 NC_002512.2 + 3715 0.69 0.741379
Target:  5'- --cGGuCgCUCCCCGggucggacucguACCCCAGGGugGa -3'
miRNA:   3'- guaCCuG-GAGGGGC------------UGGGGUCCUugU- -5'
9235 3' -59 NC_002512.2 + 6846 0.66 0.880317
Target:  5'- --gGGcACCUCCCgGACCUCGccGGAGu- -3'
miRNA:   3'- guaCC-UGGAGGGgCUGGGGU--CCUUgu -5'
9235 3' -59 NC_002512.2 + 8270 0.66 0.88233
Target:  5'- gGUGGACCcgcUCCcuccucgccguccaCCGACCCCccuccgggucgacGGAGCAg -3'
miRNA:   3'- gUACCUGG---AGG--------------GGCUGGGGu------------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 10537 0.66 0.866443
Target:  5'- --aGGACCUCgCgGACgCCGGGcAGCc -3'
miRNA:   3'- guaCCUGGAGgGgCUGgGGUCC-UUGu -5'
9235 3' -59 NC_002512.2 + 13573 0.67 0.839567
Target:  5'- gUcgGGGCCgcagaugcaggugaCCCaCGuCCCCGGGAACu -3'
miRNA:   3'- -GuaCCUGGa-------------GGG-GCuGGGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 15090 0.72 0.558256
Target:  5'- --cGGACCUCCgCGACCa-GGGGACc -3'
miRNA:   3'- guaCCUGGAGGgGCUGGggUCCUUGu -5'
9235 3' -59 NC_002512.2 + 25121 0.66 0.851803
Target:  5'- --cGGuCgUCCCCGcGCCCCAGGccgggaucgcugAGCAc -3'
miRNA:   3'- guaCCuGgAGGGGC-UGGGGUCC------------UUGU- -5'
9235 3' -59 NC_002512.2 + 29817 0.7 0.694077
Target:  5'- --cGGGCUUCggcuuCCCGACCCCGaugcacuaucuGGAGCGg -3'
miRNA:   3'- guaCCUGGAG-----GGGCUGGGGU-----------CCUUGU- -5'
9235 3' -59 NC_002512.2 + 31006 0.69 0.741379
Target:  5'- uCAUGu-UCUCCCUGGCCCUGGGcAACGc -3'
miRNA:   3'- -GUACcuGGAGGGGCUGGGGUCC-UUGU- -5'
9235 3' -59 NC_002512.2 + 32165 0.69 0.722662
Target:  5'- --aGGGCCUCCCgcACCCUGGGGucGCGg -3'
miRNA:   3'- guaCCUGGAGGGgcUGGGGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 42738 1.08 0.002871
Target:  5'- cCAUGGACCUCCCCGACCCCAGGAACAg -3'
miRNA:   3'- -GUACCUGGAGGGGCUGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 43063 0.67 0.844208
Target:  5'- --aGGGCCUCgCCGAggcaccggUCCCGGGGcGCGg -3'
miRNA:   3'- guaCCUGGAGgGGCU--------GGGGUCCU-UGU- -5'
9235 3' -59 NC_002512.2 + 43526 0.68 0.749692
Target:  5'- aCAU-GACgUCCCCGGCCCCGaagacguugucgcGGAugAc -3'
miRNA:   3'- -GUAcCUGgAGGGGCUGGGGU-------------CCUugU- -5'
9235 3' -59 NC_002512.2 + 44224 0.66 0.851803
Target:  5'- --aGGACUucaggaUCCCCGcgacgucCCCCAGGAGg- -3'
miRNA:   3'- guaCCUGG------AGGGGCu------GGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 47869 0.66 0.866443
Target:  5'- --aGGGCCUUcuaccgccugggCCUGACCCCGaGGACGc -3'
miRNA:   3'- guaCCUGGAG------------GGGCUGGGGUcCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.