miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9235 3' -59 NC_002512.2 + 229595 0.66 0.859216
Target:  5'- gCGUGGGCUgCCCUGGCCCCccGucGCGc -3'
miRNA:   3'- -GUACCUGGaGGGGCUGGGGucCu-UGU- -5'
9235 3' -59 NC_002512.2 + 229417 0.69 0.741379
Target:  5'- --aGGGCCggUCCuCCucCCCCGGGGGCGu -3'
miRNA:   3'- guaCCUGG--AGG-GGcuGGGGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 226493 0.66 0.851803
Target:  5'- cCGUGGuCCUCUggggaccugUgGGCCCCGcGGAGCGg -3'
miRNA:   3'- -GUACCuGGAGG---------GgCUGGGGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 226286 0.66 0.859216
Target:  5'- --cGGGCUcugcgccugUCCCCGAgacCCCCGGGGc-- -3'
miRNA:   3'- guaCCUGG---------AGGGGCU---GGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 224381 0.67 0.844208
Target:  5'- uCcgGGACCUCg-CGACCCCGGcgcGGACGc -3'
miRNA:   3'- -GuaCCUGGAGggGCUGGGGUC---CUUGU- -5'
9235 3' -59 NC_002512.2 + 224074 0.66 0.873478
Target:  5'- -cUGcGACCUCUCCacggagGACCUCAGGGGg- -3'
miRNA:   3'- guAC-CUGGAGGGG------CUGGGGUCCUUgu -5'
9235 3' -59 NC_002512.2 + 222985 0.66 0.880317
Target:  5'- --cGGuCUUCCUCGACCugCCGgGGAGCGg -3'
miRNA:   3'- guaCCuGGAGGGGCUGG--GGU-CCUUGU- -5'
9235 3' -59 NC_002512.2 + 222613 0.68 0.786514
Target:  5'- cCcgGGGCCUCgcgCCCGAUCCCGacGGACGc -3'
miRNA:   3'- -GuaCCUGGAG---GGGCUGGGGUc-CUUGU- -5'
9235 3' -59 NC_002512.2 + 221820 0.66 0.859216
Target:  5'- --aGGAgCUCgucucggcgUCCGACCCgCGGGGGCGc -3'
miRNA:   3'- guaCCUgGAG---------GGGCUGGG-GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 217766 0.67 0.836439
Target:  5'- --cGGGCCcgUCCCCGuCgCCGGGGucGCGg -3'
miRNA:   3'- guaCCUGG--AGGGGCuGgGGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 214202 0.66 0.886955
Target:  5'- --aGGACCcgcugCgCCCGcuGCCCCGGGAc-- -3'
miRNA:   3'- guaCCUGGa----G-GGGC--UGGGGUCCUugu -5'
9235 3' -59 NC_002512.2 + 211864 0.66 0.873478
Target:  5'- --aGGACCUCagcaucgUCGGCgCCCuGGAGCGg -3'
miRNA:   3'- guaCCUGGAGg------GGCUG-GGGuCCUUGU- -5'
9235 3' -59 NC_002512.2 + 211829 0.66 0.859216
Target:  5'- ---cGACUUCCUgGACCCCGGGcuCu -3'
miRNA:   3'- guacCUGGAGGGgCUGGGGUCCuuGu -5'
9235 3' -59 NC_002512.2 + 208712 0.67 0.8204
Target:  5'- --cGGGgCUCgCCGACCagauCGGGAGCGc -3'
miRNA:   3'- guaCCUgGAGgGGCUGGg---GUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 201804 0.66 0.886955
Target:  5'- --gGcGACCUCUCCGccgucuccgccGCgCCCGGGGGCu -3'
miRNA:   3'- guaC-CUGGAGGGGC-----------UG-GGGUCCUUGu -5'
9235 3' -59 NC_002512.2 + 194833 0.7 0.694077
Target:  5'- cCGUGGugCUgUCCCGGCCCguGcGGACc -3'
miRNA:   3'- -GUACCugGA-GGGGCUGGGguC-CUUGu -5'
9235 3' -59 NC_002512.2 + 189964 0.66 0.886955
Target:  5'- --cGGACCUCUUCGAgCUgCGGGAccGCGu -3'
miRNA:   3'- guaCCUGGAGGGGCU-GGgGUCCU--UGU- -5'
9235 3' -59 NC_002512.2 + 184275 0.67 0.80374
Target:  5'- --cGGGCgUCUCCGGCauccagaUCGGGAACAg -3'
miRNA:   3'- guaCCUGgAGGGGCUGg------GGUCCUUGU- -5'
9235 3' -59 NC_002512.2 + 180019 0.66 0.85479
Target:  5'- --gGGACUcgaucacgcucgggaUCUCCGAUCCCAGGcgguGCGg -3'
miRNA:   3'- guaCCUGG---------------AGGGGCUGGGGUCCu---UGU- -5'
9235 3' -59 NC_002512.2 + 174534 0.66 0.859216
Target:  5'- --cGGuCCUCCUgGAUCgagaaCCAGGAGCGu -3'
miRNA:   3'- guaCCuGGAGGGgCUGG-----GGUCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.