miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 3' -60.4 NC_002512.2 + 51659 1.09 0.002223
Target:  5'- cCGUCCCCGGAGACCCUGGACCUGUGGc -3'
miRNA:   3'- -GCAGGGGCCUCUGGGACCUGGACACC- -5'
9243 3' -60.4 NC_002512.2 + 226299 0.87 0.065659
Target:  5'- uGUCCCC-GAGACCCccgGGGCCUGUGGg -3'
miRNA:   3'- gCAGGGGcCUCUGGGa--CCUGGACACC- -5'
9243 3' -60.4 NC_002512.2 + 10333 0.74 0.441556
Target:  5'- aCGUCCCCGGcgaAGACCCgu--CCgGUGGg -3'
miRNA:   3'- -GCAGGGGCC---UCUGGGaccuGGaCACC- -5'
9243 3' -60.4 NC_002512.2 + 49966 0.72 0.50261
Target:  5'- aGUgCCUGGGGAUCCUGGACUUccUGGc -3'
miRNA:   3'- gCAgGGGCCUCUGGGACCUGGAc-ACC- -5'
9243 3' -60.4 NC_002512.2 + 208026 0.72 0.51164
Target:  5'- aGUCggggCGGAGACCCUGGcCCggGUGGu -3'
miRNA:   3'- gCAGgg--GCCUCUGGGACCuGGa-CACC- -5'
9243 3' -60.4 NC_002512.2 + 214857 0.72 0.520736
Target:  5'- ---aCCUGGAGGCCCaGGACCUGg-- -3'
miRNA:   3'- gcagGGGCCUCUGGGaCCUGGACacc -5'
9243 3' -60.4 NC_002512.2 + 115747 0.72 0.520736
Target:  5'- uCGUCCucugCCGGcuGCuCCUGGACCgGUGGc -3'
miRNA:   3'- -GCAGG----GGCCucUG-GGACCUGGaCACC- -5'
9243 3' -60.4 NC_002512.2 + 116391 0.72 0.529894
Target:  5'- gGUCCCCGGGGcgggucGCCCUGacgcCCUcGUGGu -3'
miRNA:   3'- gCAGGGGCCUC------UGGGACcu--GGA-CACC- -5'
9243 3' -60.4 NC_002512.2 + 74759 0.71 0.576471
Target:  5'- -uUCCCCGGAcGACCCaGGAgCUcuuccaggGUGGg -3'
miRNA:   3'- gcAGGGGCCU-CUGGGaCCUgGA--------CACC- -5'
9243 3' -60.4 NC_002512.2 + 34991 0.71 0.576471
Target:  5'- gCGUCCCgCGGAGGagaagggcaCCaGGGCCagGUGGg -3'
miRNA:   3'- -GCAGGG-GCCUCUg--------GGaCCUGGa-CACC- -5'
9243 3' -60.4 NC_002512.2 + 78163 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 78243 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 185415 0.71 0.599171
Target:  5'- cCGgCCCCGGGGcGCCCUGGAggucuucgaggccguCCUGUc- -3'
miRNA:   3'- -GCaGGGGCCUC-UGGGACCU---------------GGACAcc -5'
9243 3' -60.4 NC_002512.2 + 146801 0.7 0.623897
Target:  5'- --aCCCggaGGAGGCCCgGGACCUGg-- -3'
miRNA:   3'- gcaGGGg--CCUCUGGGaCCUGGACacc -5'
9243 3' -60.4 NC_002512.2 + 142631 0.7 0.623897
Target:  5'- uCGcUCCCCGGAGACCCcucgcaGGuCagguugaUGUGGa -3'
miRNA:   3'- -GC-AGGGGCCUCUGGGa-----CCuGg------ACACC- -5'
9243 3' -60.4 NC_002512.2 + 53380 0.7 0.623897
Target:  5'- aCG-CUCCGGAGACCgaGGACgaG-GGa -3'
miRNA:   3'- -GCaGGGGCCUCUGGgaCCUGgaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 149138 0.7 0.642947
Target:  5'- --cCCCCGG-GACCCgGGACCgccgcgGGg -3'
miRNA:   3'- gcaGGGGCCuCUGGGaCCUGGaca---CC- -5'
9243 3' -60.4 NC_002512.2 + 135655 0.7 0.661967
Target:  5'- uCGUaCCCCGuGGuGAUCCUGGucguCCUcGUGGg -3'
miRNA:   3'- -GCA-GGGGC-CU-CUGGGACCu---GGA-CACC- -5'
9243 3' -60.4 NC_002512.2 + 152196 0.69 0.690324
Target:  5'- gGUCCUCGGAgagugGACCCcGGuCCUGgccGGu -3'
miRNA:   3'- gCAGGGGCCU-----CUGGGaCCuGGACa--CC- -5'
9243 3' -60.4 NC_002512.2 + 100472 0.69 0.699702
Target:  5'- gCGUUCUCGGucguGGCCC-GGACCU-UGGg -3'
miRNA:   3'- -GCAGGGGCCu---CUGGGaCCUGGAcACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.