miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 3' -60.4 NC_002512.2 + 51659 1.09 0.002223
Target:  5'- cCGUCCCCGGAGACCCUGGACCUGUGGc -3'
miRNA:   3'- -GCAGGGGCCUCUGGGACCUGGACACC- -5'
9243 3' -60.4 NC_002512.2 + 61450 0.67 0.789557
Target:  5'- -aUCCugCUGGuGGCCCgGGACCUGUaccGGg -3'
miRNA:   3'- gcAGG--GGCCuCUGGGaCCUGGACA---CC- -5'
9243 3' -60.4 NC_002512.2 + 55629 0.67 0.814452
Target:  5'- --aCCCCGG-GACCC-GGACCcG-GGc -3'
miRNA:   3'- gcaGGGGCCuCUGGGaCCUGGaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 105084 0.66 0.860205
Target:  5'- aGUCuCCCGGcuccgucagcuGGACCC-GGACCcG-GGa -3'
miRNA:   3'- gCAG-GGGCC-----------UCUGGGaCCUGGaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 116391 0.72 0.529894
Target:  5'- gGUCCCCGGGGcgggucGCCCUGacgcCCUcGUGGu -3'
miRNA:   3'- gCAGGGGCCUC------UGGGACcu--GGA-CACC- -5'
9243 3' -60.4 NC_002512.2 + 34991 0.71 0.576471
Target:  5'- gCGUCCCgCGGAGGagaagggcaCCaGGGCCagGUGGg -3'
miRNA:   3'- -GCAGGG-GCCUCUg--------GGaCCUGGa-CACC- -5'
9243 3' -60.4 NC_002512.2 + 78243 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 77929 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 170042 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 123717 0.68 0.772335
Target:  5'- gGUUCCgGGuGGACCUgugcucGGACCUGcGGg -3'
miRNA:   3'- gCAGGGgCC-UCUGGGa-----CCUGGACaCC- -5'
9243 3' -60.4 NC_002512.2 + 45182 0.68 0.727511
Target:  5'- uCGUCCUCGGAGGuCUCgaccgGGACCgGcGGc -3'
miRNA:   3'- -GCAGGGGCCUCU-GGGa----CCUGGaCaCC- -5'
9243 3' -60.4 NC_002512.2 + 78085 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 10333 0.74 0.441556
Target:  5'- aCGUCCCCGGcgaAGACCCgu--CCgGUGGg -3'
miRNA:   3'- -GCAGGGGCC---UCUGGGaccuGGaCACC- -5'
9243 3' -60.4 NC_002512.2 + 226497 0.68 0.754679
Target:  5'- gGUCCuCUGGGGACCUgUGGGCCccGcGGa -3'
miRNA:   3'- gCAGG-GGCCUCUGGG-ACCUGGa-CaCC- -5'
9243 3' -60.4 NC_002512.2 + 49966 0.72 0.50261
Target:  5'- aGUgCCUGGGGAUCCUGGACUUccUGGc -3'
miRNA:   3'- gCAgGGGCCUCUGGGACCUGGAc-ACC- -5'
9243 3' -60.4 NC_002512.2 + 78007 0.69 0.719227
Target:  5'- cCGUUCaCGGAGACCC-GGugucgucaugaccacCCUGUGGg -3'
miRNA:   3'- -GCAGGgGCCUCUGGGaCCu--------------GGACACC- -5'
9243 3' -60.4 NC_002512.2 + 133571 0.68 0.763557
Target:  5'- gCGUCCCCaucgaccgccGGGGACCCgagcGGGCCg---- -3'
miRNA:   3'- -GCAGGGG----------CCUCUGGGa---CCUGGacacc -5'
9243 3' -60.4 NC_002512.2 + 134199 0.67 0.797987
Target:  5'- cCGUCCCCgccGGAGGCCCggcGGACg----- -3'
miRNA:   3'- -GCAGGGG---CCUCUGGGa--CCUGgacacc -5'
9243 3' -60.4 NC_002512.2 + 115747 0.72 0.520736
Target:  5'- uCGUCCucugCCGGcuGCuCCUGGACCgGUGGc -3'
miRNA:   3'- -GCAGG----GGCCucUG-GGACCUGGaCACC- -5'
9243 3' -60.4 NC_002512.2 + 78163 0.71 0.589693
Target:  5'- cCGUUCUCGGAGACCCgaagugucgucauGAucacCCUGUGGg -3'
miRNA:   3'- -GCAGGGGCCUCUGGGac-----------CU----GGACACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.