miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 51694 1.06 0.00363
Target:  5'- gAUCCAGGAGGCCGAAGAGAUGGCCGUg -3'
miRNA:   3'- -UAGGUCCUCCGGCUUCUCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 187074 0.81 0.168967
Target:  5'- cGUCuCAGGAGGCCGugcuGaAGAUGGCCGUc -3'
miRNA:   3'- -UAG-GUCCUCCGGCuu--C-UCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 223850 0.8 0.18627
Target:  5'- ---gAGGAGGCCGAGGAGGaGGCCGa -3'
miRNA:   3'- uaggUCCUCCGGCUUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 223874 0.8 0.18627
Target:  5'- ---gAGGAGGCCGAGGAGGaGGCCGa -3'
miRNA:   3'- uaggUCCUCCGGCUUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 220332 0.78 0.258926
Target:  5'- cUCCGGGGGGCCGGAcGGccucgucaacgccGUGGCCGUg -3'
miRNA:   3'- uAGGUCCUCCGGCUUcUC-------------UACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 175522 0.74 0.402343
Target:  5'- gGUCCAGaAGGCCuGGAG-GGUGGCCGc -3'
miRNA:   3'- -UAGGUCcUCCGG-CUUCuCUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 90900 0.72 0.527782
Target:  5'- cGUCCGGGAcGGCCGGAcuGgcGGCCGc -3'
miRNA:   3'- -UAGGUCCU-CCGGCUUcuCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 190420 0.72 0.53735
Target:  5'- -gCCGGG-GGCUGcGGGAGcgGGCCGUc -3'
miRNA:   3'- uaGGUCCuCCGGC-UUCUCuaCCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 128577 0.72 0.53735
Target:  5'- cUCCGGG-GGCCGAcccugcGAGA-GGCCGg -3'
miRNA:   3'- uAGGUCCuCCGGCUu-----CUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 96194 0.71 0.556659
Target:  5'- gGUCCGGGAGGCgGccgcGAGGUcGGCCa- -3'
miRNA:   3'- -UAGGUCCUCCGgCuu--CUCUA-CCGGca -5'
9243 5' -58.8 NC_002512.2 + 229568 0.71 0.585974
Target:  5'- --gCAGGAGGCgGcAGAGGaGGCCGg -3'
miRNA:   3'- uagGUCCUCCGgCuUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 165 0.71 0.585974
Target:  5'- --gCAGGAGGCgGcAGAGGaGGCCGg -3'
miRNA:   3'- uagGUCCUCCGgCuUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 222344 0.7 0.625464
Target:  5'- cUCCAGGAGGagGAGGAGcggcacggGGCCGc -3'
miRNA:   3'- uAGGUCCUCCggCUUCUCua------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 7847 0.7 0.625464
Target:  5'- -cCCAGGAucaGGgaGAAGAGcgGGCCGg -3'
miRNA:   3'- uaGGUCCU---CCggCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 134717 0.7 0.665028
Target:  5'- cAUCCuGGGGGCCGggG-GAaGGCUc- -3'
miRNA:   3'- -UAGGuCCUCCGGCuuCuCUaCCGGca -5'
9243 5' -58.8 NC_002512.2 + 52254 0.7 0.665028
Target:  5'- cGUCCGGGAGGCgGA----GUGGCUGa -3'
miRNA:   3'- -UAGGUCCUCCGgCUucucUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 84763 0.69 0.674875
Target:  5'- -gCCAGGuAGGCgu-AGuAGAUGGCCGUg -3'
miRNA:   3'- uaGGUCC-UCCGgcuUC-UCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 208759 0.69 0.674875
Target:  5'- -cCCAGGAaGCCGAAGcGGAaGGCCa- -3'
miRNA:   3'- uaGGUCCUcCGGCUUC-UCUaCCGGca -5'
9243 5' -58.8 NC_002512.2 + 108587 0.69 0.694464
Target:  5'- uUUCGGGGGGCCccGggGAGcggcGGCCGc -3'
miRNA:   3'- uAGGUCCUCCGG--CuuCUCua--CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 87303 0.69 0.70419
Target:  5'- aGUCCgAGGAGGCggccacgcagaCGAuGAGGUGGaCCGa -3'
miRNA:   3'- -UAGG-UCCUCCG-----------GCUuCUCUACC-GGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.