miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 51694 1.06 0.00363
Target:  5'- gAUCCAGGAGGCCGAAGAGAUGGCCGUg -3'
miRNA:   3'- -UAGGUCCUCCGGCUUCUCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 126284 0.68 0.779245
Target:  5'- -aCCGGGAGGCCGucGAcaccgcccucGUGGCCu- -3'
miRNA:   3'- uaGGUCCUCCGGCuuCUc---------UACCGGca -5'
9243 5' -58.8 NC_002512.2 + 117038 0.67 0.796941
Target:  5'- -gCCGGGAGuucGCCG-AGAuGAcGGCCGUg -3'
miRNA:   3'- uaGGUCCUC---CGGCuUCU-CUaCCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 32709 0.66 0.871683
Target:  5'- gGUCCAuGAGGaCGAAGAGGcgcggguggaagacGGCCGUg -3'
miRNA:   3'- -UAGGUcCUCCgGCUUCUCUa-------------CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 229568 0.71 0.585974
Target:  5'- --gCAGGAGGCgGcAGAGGaGGCCGg -3'
miRNA:   3'- uagGUCCUCCGgCuUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 7847 0.7 0.625464
Target:  5'- -cCCAGGAucaGGgaGAAGAGcgGGCCGg -3'
miRNA:   3'- uaGGUCCU---CCggCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 134717 0.7 0.665028
Target:  5'- cAUCCuGGGGGCCGggG-GAaGGCUc- -3'
miRNA:   3'- -UAGGuCCUCCGGCuuCuCUaCCGGca -5'
9243 5' -58.8 NC_002512.2 + 84763 0.69 0.674875
Target:  5'- -gCCAGGuAGGCgu-AGuAGAUGGCCGUg -3'
miRNA:   3'- uaGGUCC-UCCGgcuUC-UCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 47473 0.69 0.713858
Target:  5'- uUCCgcaAGGcgguggacaAGGCCGggGAGAcgcUGGCCa- -3'
miRNA:   3'- uAGG---UCC---------UCCGGCuuCUCU---ACCGGca -5'
9243 5' -58.8 NC_002512.2 + 129570 0.68 0.770208
Target:  5'- -cCCGGGAGGCCG------UGGCCGa -3'
miRNA:   3'- uaGGUCCUCCGGCuucucuACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 86239 0.68 0.761056
Target:  5'- -aCgAGGAGGaCCcgGggGAGAgGGCCGa -3'
miRNA:   3'- uaGgUCCUCC-GG--CuuCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 87303 0.69 0.70419
Target:  5'- aGUCCgAGGAGGCggccacgcagaCGAuGAGGUGGaCCGa -3'
miRNA:   3'- -UAGG-UCCUCCG-----------GCUuCUCUACC-GGCa -5'
9243 5' -58.8 NC_002512.2 + 90900 0.72 0.527782
Target:  5'- cGUCCGGGAcGGCCGGAcuGgcGGCCGc -3'
miRNA:   3'- -UAGGUCCU-CCGGCUUcuCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 89193 0.68 0.761056
Target:  5'- gGUCCAguuGGAGGCguuguCGA--AGGUGGCCGg -3'
miRNA:   3'- -UAGGU---CCUCCG-----GCUucUCUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 128577 0.72 0.53735
Target:  5'- cUCCGGG-GGCCGAcccugcGAGA-GGCCGg -3'
miRNA:   3'- uAGGUCCuCCGGCUu-----CUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 108587 0.69 0.694464
Target:  5'- uUUCGGGGGGCCccGggGAGcggcGGCCGc -3'
miRNA:   3'- uAGGUCCUCCGG--CuuCUCua--CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 11304 0.68 0.770208
Target:  5'- -cCgGGGAGaccuCCG-AGAGAUGGCCGa -3'
miRNA:   3'- uaGgUCCUCc---GGCuUCUCUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 6438 0.68 0.779245
Target:  5'- cGUCUGGcGGGcGCCGAgacAGGGGUcGGCCGg -3'
miRNA:   3'- -UAGGUC-CUC-CGGCU---UCUCUA-CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 165 0.71 0.585974
Target:  5'- --gCAGGAGGCgGcAGAGGaGGCCGg -3'
miRNA:   3'- uagGUCCUCCGgCuUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 52254 0.7 0.665028
Target:  5'- cGUCCGGGAGGCgGA----GUGGCUGa -3'
miRNA:   3'- -UAGGUCCUCCGgCUucucUACCGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.