miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9243 5' -58.8 NC_002512.2 + 165 0.71 0.585974
Target:  5'- --gCAGGAGGCgGcAGAGGaGGCCGg -3'
miRNA:   3'- uagGUCCUCCGgCuUCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 4576 0.66 0.86156
Target:  5'- cGUCUGGGGcGGCgGAGGAGGcggcgccgcgGGCCGc -3'
miRNA:   3'- -UAGGUCCU-CCGgCUUCUCUa---------CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 6438 0.68 0.779245
Target:  5'- cGUCUGGcGGGcGCCGAgacAGGGGUcGGCCGg -3'
miRNA:   3'- -UAGGUC-CUC-CGGCU---UCUCUA-CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 7759 0.68 0.751797
Target:  5'- -gCCGGGGcgguagucGGCCGcGGAGAUGGUgGg -3'
miRNA:   3'- uaGGUCCU--------CCGGCuUCUCUACCGgCa -5'
9243 5' -58.8 NC_002512.2 + 7847 0.7 0.625464
Target:  5'- -cCCAGGAucaGGgaGAAGAGcgGGCCGg -3'
miRNA:   3'- uaGGUCCU---CCggCUUCUCuaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 11304 0.68 0.770208
Target:  5'- -cCgGGGAGaccuCCG-AGAGAUGGCCGa -3'
miRNA:   3'- uaGgUCCUCc---GGCuUCUCUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 11596 0.66 0.845668
Target:  5'- -cCCAGGgccggggaccccgAGGCCGAGGAGAaugaguacaUGGUgGa -3'
miRNA:   3'- uaGGUCC-------------UCCGGCUUCUCU---------ACCGgCa -5'
9243 5' -58.8 NC_002512.2 + 15555 0.66 0.854096
Target:  5'- -cUgAGGAGGCCGGAGucGUcGGCCu- -3'
miRNA:   3'- uaGgUCCUCCGGCUUCucUA-CCGGca -5'
9243 5' -58.8 NC_002512.2 + 25617 0.67 0.814079
Target:  5'- cGUCCAGGAGGCgGuagguguGGAGGUuaucGGCgGc -3'
miRNA:   3'- -UAGGUCCUCCGgCu------UCUCUA----CCGgCa -5'
9243 5' -58.8 NC_002512.2 + 32709 0.66 0.871683
Target:  5'- gGUCCAuGAGGaCGAAGAGGcgcggguggaagacGGCCGUg -3'
miRNA:   3'- -UAGGUcCUCCgGCUUCUCUa-------------CCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 44474 0.67 0.82242
Target:  5'- cUCCAGGgcgccccgGGGCCGGgcGGAGAagacGGCCu- -3'
miRNA:   3'- uAGGUCC--------UCCGGCU--UCUCUa---CCGGca -5'
9243 5' -58.8 NC_002512.2 + 45460 0.67 0.805584
Target:  5'- -gCCGGcGGcGGCCGAggcgacGGAGAaGGCCGa -3'
miRNA:   3'- uaGGUC-CU-CCGGCU------UCUCUaCCGGCa -5'
9243 5' -58.8 NC_002512.2 + 47473 0.69 0.713858
Target:  5'- uUCCgcaAGGcgguggacaAGGCCGggGAGAcgcUGGCCa- -3'
miRNA:   3'- uAGG---UCC---------UCCGGCuuCUCU---ACCGGca -5'
9243 5' -58.8 NC_002512.2 + 51694 1.06 0.00363
Target:  5'- gAUCCAGGAGGCCGAAGAGAUGGCCGUg -3'
miRNA:   3'- -UAGGUCCUCCGGCUUCUCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 52254 0.7 0.665028
Target:  5'- cGUCCGGGAGGCgGA----GUGGCUGa -3'
miRNA:   3'- -UAGGUCCUCCGgCUucucUACCGGCa -5'
9243 5' -58.8 NC_002512.2 + 74395 0.68 0.742439
Target:  5'- uUCCAGGAGaGCgGcGGccAUGGCCGUc -3'
miRNA:   3'- uAGGUCCUC-CGgCuUCucUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 80704 0.67 0.82242
Target:  5'- cGUCCGGGGGG-CGAGGGcgcGcgGGCCc- -3'
miRNA:   3'- -UAGGUCCUCCgGCUUCU---CuaCCGGca -5'
9243 5' -58.8 NC_002512.2 + 84763 0.69 0.674875
Target:  5'- -gCCAGGuAGGCgu-AGuAGAUGGCCGUg -3'
miRNA:   3'- uaGGUCC-UCCGgcuUC-UCUACCGGCA- -5'
9243 5' -58.8 NC_002512.2 + 85560 0.66 0.846444
Target:  5'- cUCgAGGAGGCgCGGGagcGGGAgcGGCCGg -3'
miRNA:   3'- uAGgUCCUCCG-GCUU---CUCUa-CCGGCa -5'
9243 5' -58.8 NC_002512.2 + 86239 0.68 0.761056
Target:  5'- -aCgAGGAGGaCCcgGggGAGAgGGCCGa -3'
miRNA:   3'- uaGgUCCUCC-GG--CuuCUCUaCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.