miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 3' -51.3 NC_002512.2 + 52842 1.09 0.010627
Target:  5'- cACGAACAAGCACCUACGGCUCAACUGg -3'
miRNA:   3'- -UGCUUGUUCGUGGAUGCCGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 12734 0.78 0.631859
Target:  5'- gACGAugGAGaGCCUGCGGCgcaAGCUGg -3'
miRNA:   3'- -UGCUugUUCgUGGAUGCCGag-UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 133595 0.78 0.641191
Target:  5'- cCGAGCGGGCcggccuccugcggACCUACGGCUCGAUc- -3'
miRNA:   3'- uGCUUGUUCG-------------UGGAUGCCGAGUUGac -5'
9246 3' -51.3 NC_002512.2 + 96130 0.76 0.72414
Target:  5'- uCGAACAGGCACC-GCGGC--AGCUGg -3'
miRNA:   3'- uGCUUGUUCGUGGaUGCCGagUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 183901 0.76 0.743009
Target:  5'- uACGGACAgucgaacGGCuGCCUcgggacccuucaGCGGCUCGGCUGg -3'
miRNA:   3'- -UGCUUGU-------UCG-UGGA------------UGCCGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 222867 0.74 0.82727
Target:  5'- gACGAGCccggcaAGGC-CCUGCGGCUCucCUGc -3'
miRNA:   3'- -UGCUUG------UUCGuGGAUGCCGAGuuGAC- -5'
9246 3' -51.3 NC_002512.2 + 28257 0.73 0.85993
Target:  5'- cGCGAguACGacGGCGCCUACcGCUCGgcGCUGg -3'
miRNA:   3'- -UGCU--UGU--UCGUGGAUGcCGAGU--UGAC- -5'
9246 3' -51.3 NC_002512.2 + 117692 0.73 0.867585
Target:  5'- gACGAGCugcguggcGCACCUGCGGCgggugcgCAGCg- -3'
miRNA:   3'- -UGCUUGuu------CGUGGAUGCCGa------GUUGac -5'
9246 3' -51.3 NC_002512.2 + 77234 0.73 0.875021
Target:  5'- gGCGAACGAGCGCCcggGCGGUg-AGCg- -3'
miRNA:   3'- -UGCUUGUUCGUGGa--UGCCGagUUGac -5'
9246 3' -51.3 NC_002512.2 + 126502 0.72 0.895975
Target:  5'- cCGGagcGCGAGCGCCUcgGCGGCUcCGGCg- -3'
miRNA:   3'- uGCU---UGUUCGUGGA--UGCCGA-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 212148 0.72 0.902492
Target:  5'- uGCGucGGCGGGCACUgGCGGCgggaCGGCUGg -3'
miRNA:   3'- -UGC--UUGUUCGUGGaUGCCGa---GUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 8108 0.72 0.914806
Target:  5'- -aGAGCAGGCGCCaggacacgACGGCcgccCAGCUGc -3'
miRNA:   3'- ugCUUGUUCGUGGa-------UGCCGa---GUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 129937 0.72 0.920599
Target:  5'- cCGAuCAGGCACCgGCGGCagCAGCa- -3'
miRNA:   3'- uGCUuGUUCGUGGaUGCCGa-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 226588 0.71 0.931448
Target:  5'- gGCGAGgAGGCAUCguggGCGGCUCuggGCg- -3'
miRNA:   3'- -UGCUUgUUCGUGGa---UGCCGAGu--UGac -5'
9246 3' -51.3 NC_002512.2 + 42570 0.71 0.941316
Target:  5'- cACGGGCGGGCGCCgcgaGGCgagCGGCg- -3'
miRNA:   3'- -UGCUUGUUCGUGGaug-CCGa--GUUGac -5'
9246 3' -51.3 NC_002512.2 + 104873 0.71 0.941316
Target:  5'- aGCGGGC-GGCGCCgACGGCgCGACg- -3'
miRNA:   3'- -UGCUUGuUCGUGGaUGCCGaGUUGac -5'
9246 3' -51.3 NC_002512.2 + 120699 0.71 0.945886
Target:  5'- cCGAGCGGgcGCACCUGgGGCUCuuCa- -3'
miRNA:   3'- uGCUUGUU--CGUGGAUgCCGAGuuGac -5'
9246 3' -51.3 NC_002512.2 + 120989 0.71 0.945886
Target:  5'- gGCGAACGGGCcCCgACGGCagAGCg- -3'
miRNA:   3'- -UGCUUGUUCGuGGaUGCCGagUUGac -5'
9246 3' -51.3 NC_002512.2 + 107923 0.7 0.950215
Target:  5'- gGCGGGCGGGgACC--CGGgUCAGCUGc -3'
miRNA:   3'- -UGCUUGUUCgUGGauGCCgAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 81665 0.7 0.953104
Target:  5'- gGCGAACAccuugucguacaugAGCGCCcGCaGCUCGGCg- -3'
miRNA:   3'- -UGCUUGU--------------UCGUGGaUGcCGAGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.