miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 3' -51.3 NC_002512.2 + 2696 0.69 0.979066
Target:  5'- cGCGcGgGAGCGCCUGCcGCUCccccGGCUGc -3'
miRNA:   3'- -UGCuUgUUCGUGGAUGcCGAG----UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 2825 0.69 0.968385
Target:  5'- cGCGGgcGCGGGC-CCggacgACGGCgggCAGCUGc -3'
miRNA:   3'- -UGCU--UGUUCGuGGa----UGCCGa--GUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 4160 0.69 0.979066
Target:  5'- cUGAGCGAGuCGCC-GCGGCUCGcggGCg- -3'
miRNA:   3'- uGCUUGUUC-GUGGaUGCCGAGU---UGac -5'
9246 3' -51.3 NC_002512.2 + 8108 0.72 0.914806
Target:  5'- -aGAGCAGGCGCCaggacacgACGGCcgccCAGCUGc -3'
miRNA:   3'- ugCUUGUUCGUGGa-------UGCCGa---GUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 12734 0.78 0.631859
Target:  5'- gACGAugGAGaGCCUGCGGCgcaAGCUGg -3'
miRNA:   3'- -UGCUugUUCgUGGAUGCCGag-UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 22901 0.66 0.996219
Target:  5'- cGCGGgccACGGGCAUCccggGCGGCUUcuuccuGCUGa -3'
miRNA:   3'- -UGCU---UGUUCGUGGa---UGCCGAGu-----UGAC- -5'
9246 3' -51.3 NC_002512.2 + 23487 0.66 0.997688
Target:  5'- cCGAGCAuGCuggugCUGCGGUUCgAGCUGu -3'
miRNA:   3'- uGCUUGUuCGug---GAUGCCGAG-UUGAC- -5'
9246 3' -51.3 NC_002512.2 + 28257 0.73 0.85993
Target:  5'- cGCGAguACGacGGCGCCUACcGCUCGgcGCUGg -3'
miRNA:   3'- -UGCU--UGU--UCGUGGAUGcCGAGU--UGAC- -5'
9246 3' -51.3 NC_002512.2 + 29593 0.7 0.961795
Target:  5'- gGCGGACGAGCcCCaguccgACGGCUCGu--- -3'
miRNA:   3'- -UGCUUGUUCGuGGa-----UGCCGAGUugac -5'
9246 3' -51.3 NC_002512.2 + 35072 0.68 0.986643
Target:  5'- cACGGugcCGAGCuCCUGCuccacccGGCUCAGCUc -3'
miRNA:   3'- -UGCUu--GUUCGuGGAUG-------CCGAGUUGAc -5'
9246 3' -51.3 NC_002512.2 + 42570 0.71 0.941316
Target:  5'- cACGGGCGGGCGCCgcgaGGCgagCGGCg- -3'
miRNA:   3'- -UGCUUGUUCGUGGaug-CCGa--GUUGac -5'
9246 3' -51.3 NC_002512.2 + 43090 0.69 0.976691
Target:  5'- gGCGcGGCGAGCAgCggggACGGCUCGAg-- -3'
miRNA:   3'- -UGC-UUGUUCGUgGa---UGCCGAGUUgac -5'
9246 3' -51.3 NC_002512.2 + 48356 0.69 0.979066
Target:  5'- gGCGuGCGAGCugCUgaACGGCagCGACg- -3'
miRNA:   3'- -UGCuUGUUCGugGA--UGCCGa-GUUGac -5'
9246 3' -51.3 NC_002512.2 + 48698 0.7 0.965199
Target:  5'- cACGGGCGAGgACC-ACGcGUUCGACUc -3'
miRNA:   3'- -UGCUUGUUCgUGGaUGC-CGAGUUGAc -5'
9246 3' -51.3 NC_002512.2 + 51742 0.69 0.974124
Target:  5'- gGCGGAgAGGCugCUGCGGac--GCUGa -3'
miRNA:   3'- -UGCUUgUUCGugGAUGCCgaguUGAC- -5'
9246 3' -51.3 NC_002512.2 + 51996 0.69 0.981257
Target:  5'- gACGAACcugaucGAGCACCUACcGCcgUCGACg- -3'
miRNA:   3'- -UGCUUG------UUCGUGGAUGcCG--AGUUGac -5'
9246 3' -51.3 NC_002512.2 + 52842 1.09 0.010627
Target:  5'- cACGAACAAGCACCUACGGCUCAACUGg -3'
miRNA:   3'- -UGCUUGUUCGUGGAUGCCGAGUUGAC- -5'
9246 3' -51.3 NC_002512.2 + 62332 0.7 0.954307
Target:  5'- aGCcGACGGGCACCcccugGCGGCgCAGCUc -3'
miRNA:   3'- -UGcUUGUUCGUGGa----UGCCGaGUUGAc -5'
9246 3' -51.3 NC_002512.2 + 63031 0.7 0.954307
Target:  5'- gGCGAGCAgggAGCGCCggACGuGCUCc-CUGa -3'
miRNA:   3'- -UGCUUGU---UCGUGGa-UGC-CGAGuuGAC- -5'
9246 3' -51.3 NC_002512.2 + 74238 0.68 0.98834
Target:  5'- gGCGAACGgccggacgccgaAGCGCCgcCGGCUCucCUc -3'
miRNA:   3'- -UGCUUGU------------UCGUGGauGCCGAGuuGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.