Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9246 | 3' | -51.3 | NC_002512.2 | + | 52842 | 1.09 | 0.010627 |
Target: 5'- cACGAACAAGCACCUACGGCUCAACUGg -3' miRNA: 3'- -UGCUUGUUCGUGGAUGCCGAGUUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 51742 | 0.69 | 0.974124 |
Target: 5'- gGCGGAgAGGCugCUGCGGac--GCUGa -3' miRNA: 3'- -UGCUUgUUCGugGAUGCCgaguUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 4160 | 0.69 | 0.979066 |
Target: 5'- cUGAGCGAGuCGCC-GCGGCUCGcggGCg- -3' miRNA: 3'- uGCUUGUUC-GUGGaUGCCGAGU---UGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 132731 | 0.66 | 0.997766 |
Target: 5'- gGCGAGCAGGaCGCCgugucgcccaGGCagcugauguccugcgUCGACUGg -3' miRNA: 3'- -UGCUUGUUC-GUGGaug-------CCG---------------AGUUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 28257 | 0.73 | 0.85993 |
Target: 5'- cGCGAguACGacGGCGCCUACcGCUCGgcGCUGg -3' miRNA: 3'- -UGCU--UGU--UCGUGGAUGcCGAGU--UGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 126502 | 0.72 | 0.895975 |
Target: 5'- cCGGagcGCGAGCGCCUcgGCGGCUcCGGCg- -3' miRNA: 3'- uGCU---UGUUCGUGGA--UGCCGA-GUUGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 226588 | 0.71 | 0.931448 |
Target: 5'- gGCGAGgAGGCAUCguggGCGGCUCuggGCg- -3' miRNA: 3'- -UGCUUgUUCGUGGa---UGCCGAGu--UGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 42570 | 0.71 | 0.941316 |
Target: 5'- cACGGGCGGGCGCCgcgaGGCgagCGGCg- -3' miRNA: 3'- -UGCUUGUUCGUGGaug-CCGa--GUUGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 81665 | 0.7 | 0.953104 |
Target: 5'- gGCGAACAccuugucguacaugAGCGCCcGCaGCUCGGCg- -3' miRNA: 3'- -UGCUUGU--------------UCGUGGaUGcCGAGUUGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 2825 | 0.69 | 0.968385 |
Target: 5'- cGCGGgcGCGGGC-CCggacgACGGCgggCAGCUGc -3' miRNA: 3'- -UGCU--UGUUCGuGGa----UGCCGa--GUUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 62332 | 0.7 | 0.954307 |
Target: 5'- aGCcGACGGGCACCcccugGCGGCgCAGCUc -3' miRNA: 3'- -UGcUUGUUCGUGGa----UGCCGaGUUGAc -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 107923 | 0.7 | 0.950215 |
Target: 5'- gGCGGGCGGGgACC--CGGgUCAGCUGc -3' miRNA: 3'- -UGCUUGUUCgUGGauGCCgAGUUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 12734 | 0.78 | 0.631859 |
Target: 5'- gACGAugGAGaGCCUGCGGCgcaAGCUGg -3' miRNA: 3'- -UGCUugUUCgUGGAUGCCGag-UUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 29593 | 0.7 | 0.961795 |
Target: 5'- gGCGGACGAGCcCCaguccgACGGCUCGu--- -3' miRNA: 3'- -UGCUUGUUCGuGGa-----UGCCGAGUugac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 133595 | 0.78 | 0.641191 |
Target: 5'- cCGAGCGGGCcggccuccugcggACCUACGGCUCGAUc- -3' miRNA: 3'- uGCUUGUUCG-------------UGGAUGCCGAGUUGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 104873 | 0.71 | 0.941316 |
Target: 5'- aGCGGGC-GGCGCCgACGGCgCGACg- -3' miRNA: 3'- -UGCUUGuUCGUGGaUGCCGaGUUGac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 48698 | 0.7 | 0.965199 |
Target: 5'- cACGGGCGAGgACC-ACGcGUUCGACUc -3' miRNA: 3'- -UGCUUGUUCgUGGaUGC-CGAGUUGAc -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 43090 | 0.69 | 0.976691 |
Target: 5'- gGCGcGGCGAGCAgCggggACGGCUCGAg-- -3' miRNA: 3'- -UGC-UUGUUCGUgGa---UGCCGAGUUgac -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 96130 | 0.76 | 0.72414 |
Target: 5'- uCGAACAGGCACC-GCGGC--AGCUGg -3' miRNA: 3'- uGCUUGUUCGUGGaUGCCGagUUGAC- -5' |
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9246 | 3' | -51.3 | NC_002512.2 | + | 8108 | 0.72 | 0.914806 |
Target: 5'- -aGAGCAGGCGCCaggacacgACGGCcgccCAGCUGc -3' miRNA: 3'- ugCUUGUUCGUGGa-------UGCCGa---GUUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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