miRNA display CGI


Results 21 - 40 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9246 5' -61.6 NC_002512.2 + 80730 0.74 0.325171
Target:  5'- cCGCGGGCGGCaCC-GGC-CCCGCGgcGg -3'
miRNA:   3'- -GCGUCCGCCG-GGaCUGcGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 96310 0.74 0.339229
Target:  5'- cCGCGGGCGGgCCgGuCGCCgCACGAc- -3'
miRNA:   3'- -GCGUCCGCCgGGaCuGCGG-GUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 226517 0.74 0.339229
Target:  5'- uGCuGGCGGCCCUGccgcCGUCCucgauCGGAGg -3'
miRNA:   3'- gCGuCCGCCGGGACu---GCGGGu----GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 119104 0.74 0.339229
Target:  5'- uGCGGGCGGCCUcGGCGCagCUGCGGAc -3'
miRNA:   3'- gCGUCCGCCGGGaCUGCG--GGUGCUUc -5'
9246 5' -61.6 NC_002512.2 + 98841 0.74 0.339943
Target:  5'- gCGCGGcgccguccucccccGCGGCCCcGACGCCCucgagcgcgucgaagACGAAGa -3'
miRNA:   3'- -GCGUC--------------CGCCGGGaCUGCGGG---------------UGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 118079 0.74 0.346421
Target:  5'- aGgGGGCGGCUCcGGCGCCgGCGgcGa -3'
miRNA:   3'- gCgUCCGCCGGGaCUGCGGgUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 112386 0.74 0.346421
Target:  5'- gCGguGGCGGCCUUGAaccaGCCgACGuuGa -3'
miRNA:   3'- -GCguCCGCCGGGACUg---CGGgUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 185395 0.73 0.358898
Target:  5'- uGCgAGGCcgucuucuccgcccGGCCCcggGGCGCCCugGAGGu -3'
miRNA:   3'- gCG-UCCG--------------CCGGGa--CUGCGGGugCUUC- -5'
9246 5' -61.6 NC_002512.2 + 139749 0.73 0.361132
Target:  5'- uCGCAcuucuccGCGGCCCUcgcgcaccgGGCGCCCGCGAu- -3'
miRNA:   3'- -GCGUc------CGCCGGGA---------CUGCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 125005 0.73 0.361132
Target:  5'- uGCAucGG-GGCCaggGACGCCCGCGggGc -3'
miRNA:   3'- gCGU--CCgCCGGga-CUGCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 101313 0.73 0.368648
Target:  5'- uCGCAGGguCGGCCCccgGAgGCCguCGAAGg -3'
miRNA:   3'- -GCGUCC--GCCGGGa--CUgCGGguGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 30422 0.73 0.368648
Target:  5'- aCGCGGGCgucgucgcGGCCCUGAacgcgggccUGCCCAUGGc- -3'
miRNA:   3'- -GCGUCCG--------CCGGGACU---------GCGGGUGCUuc -5'
9246 5' -61.6 NC_002512.2 + 101885 0.73 0.376271
Target:  5'- cCGCGGGCGaaaGCgCgggGACGCCgACGggGg -3'
miRNA:   3'- -GCGUCCGC---CGgGa--CUGCGGgUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 206985 0.73 0.384
Target:  5'- cCGCccGGGauGCCC-GugGCCCGCGggGu -3'
miRNA:   3'- -GCG--UCCgcCGGGaCugCGGGUGCuuC- -5'
9246 5' -61.6 NC_002512.2 + 180656 0.73 0.391833
Target:  5'- gGCAGGCcGCCgCgGugGCCC-CGAAGa -3'
miRNA:   3'- gCGUCCGcCGG-GaCugCGGGuGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 134636 0.73 0.39977
Target:  5'- aGCcGcGCGGCCCUccgGACGCCCccucCGGAGa -3'
miRNA:   3'- gCGuC-CGCCGGGA---CUGCGGGu---GCUUC- -5'
9246 5' -61.6 NC_002512.2 + 7394 0.73 0.39977
Target:  5'- gCGCagaAGGCGGCCaccgccacgUUGACGaCCGCGAGGg -3'
miRNA:   3'- -GCG---UCCGCCGG---------GACUGCgGGUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 133935 0.72 0.407809
Target:  5'- gGC-GGCGGCCC-GACGgCCCGCGu-- -3'
miRNA:   3'- gCGuCCGCCGGGaCUGC-GGGUGCuuc -5'
9246 5' -61.6 NC_002512.2 + 36976 0.72 0.415948
Target:  5'- uCGgAGGCGGCUCUGGacCGCC-GCGGAGc -3'
miRNA:   3'- -GCgUCCGCCGGGACU--GCGGgUGCUUC- -5'
9246 5' -61.6 NC_002512.2 + 99728 0.72 0.424185
Target:  5'- uCGCGGGcCGGCCCgccgccgGGC-CCCGCGGc- -3'
miRNA:   3'- -GCGUCC-GCCGGGa------CUGcGGGUGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.