miRNA display CGI


Results 21 - 40 of 276 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 59515 0.71 0.350175
Target:  5'- cAGCgcggCGCCGcGCaCGGCCCUGGCc -3'
miRNA:   3'- -UCGauggGCGGCuCGcGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 103194 0.71 0.335987
Target:  5'- gAGcCUGCCCGgCGAGCGgGGguauCCgaGGCg -3'
miRNA:   3'- -UC-GAUGGGCgGCUCGCgCC----GGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 110314 0.73 0.265535
Target:  5'- aGGggACCCGCCGGGCucccGCGGUCCgcccGGUc -3'
miRNA:   3'- -UCgaUGGGCGGCUCG----CGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 119231 0.76 0.168538
Target:  5'- cGGCUGCCCGCgguCGAGCgGCGGCuggauCCcGGCg -3'
miRNA:   3'- -UCGAUGGGCG---GCUCG-CGCCG-----GGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 74006 0.7 0.395243
Target:  5'- cGC-GCCCGCCGucggggacgaacAGCGUGGCCg-GGUa -3'
miRNA:   3'- uCGaUGGGCGGC------------UCGCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 98989 0.7 0.379809
Target:  5'- gAGCcacgaugGCCgGCCucuGCGCGGCCCcgauagGGCg -3'
miRNA:   3'- -UCGa------UGGgCGGcu-CGCGCCGGGa-----CCG- -5'
9249 3' -64.4 NC_002512.2 + 7513 0.72 0.322223
Target:  5'- gAGCcagaGCCCGCCGGGgaagGCGGCCCcGuGCc -3'
miRNA:   3'- -UCGa---UGGGCGGCUCg---CGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 55401 0.78 0.120841
Target:  5'- cAGCgcCCCGCCGAGCGUG-CCgCUGGUg -3'
miRNA:   3'- -UCGauGGGCGGCUCGCGCcGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 28049 0.71 0.375259
Target:  5'- gAGCUGCCgGCCGcggaaggagcccccgGGCGCGGCggagacGGCg -3'
miRNA:   3'- -UCGAUGGgCGGC---------------UCGCGCCGgga---CCG- -5'
9249 3' -64.4 NC_002512.2 + 26542 0.79 0.109709
Target:  5'- cGGCaGCUCGcCCGAGggcugcaagauCGCGGCCCUGGCc -3'
miRNA:   3'- -UCGaUGGGC-GGCUC-----------GCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 97355 0.72 0.329052
Target:  5'- cGGCgccGCCCGCgGAGCGgGGaCCgcGGCg -3'
miRNA:   3'- -UCGa--UGGGCGgCUCGCgCCgGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 122782 0.71 0.350175
Target:  5'- cGUcuCCC-CCGAGgGCgccgGGCCCUGGCg -3'
miRNA:   3'- uCGauGGGcGGCUCgCG----CCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 11671 0.73 0.283482
Target:  5'- cGCgGCCCGCCGcggcccgaGGCgGgGGCCCgaggGGCg -3'
miRNA:   3'- uCGaUGGGCGGC--------UCG-CgCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 100216 0.73 0.271413
Target:  5'- gGGCUACgCCGUCGAG-GCGGCgUCgacgGGCg -3'
miRNA:   3'- -UCGAUG-GGCGGCUCgCGCCG-GGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 4084 0.74 0.2172
Target:  5'- aGGCcACCCgGCCGccCGCGGCCCggccGGCg -3'
miRNA:   3'- -UCGaUGGG-CGGCucGCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 32280 0.75 0.207536
Target:  5'- aGGCgGCCCGCaugagGAGgGCGGCCUcguagUGGCa -3'
miRNA:   3'- -UCGaUGGGCGg----CUCgCGCCGGG-----ACCG- -5'
9249 3' -64.4 NC_002512.2 + 119129 0.7 0.401529
Target:  5'- cGGCgggAUCaCGCCGAGCcguccuuccgccuGCacaacacGGCCCUGGCc -3'
miRNA:   3'- -UCGa--UGG-GCGGCUCG-------------CG-------CCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 126392 0.7 0.395243
Target:  5'- cGCUGCCCGgCGAGCgguccGCGGCCgccGCc -3'
miRNA:   3'- uCGAUGGGCgGCUCG-----CGCCGGgacCG- -5'
9249 3' -64.4 NC_002512.2 + 55215 0.7 0.387476
Target:  5'- cGGCcggUACCgGCUGAucGUGCGGCaCCUGGa -3'
miRNA:   3'- -UCG---AUGGgCGGCU--CGCGCCG-GGACCg -5'
9249 3' -64.4 NC_002512.2 + 133994 0.7 0.387476
Target:  5'- cGGC-ACCCGgccgggcgaccUCGAgauccucggcGCGCGGCCCUGGg -3'
miRNA:   3'- -UCGaUGGGC-----------GGCU----------CGCGCCGGGACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.