miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 54628 1.11 0.00063
Target:  5'- cAGCUACCCGCCGAGCGCGGCCCUGGCg -3'
miRNA:   3'- -UCGAUGGGCGGCUCGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 7513 0.72 0.322223
Target:  5'- gAGCcagaGCCCGCCGGGgaagGCGGCCCcGuGCc -3'
miRNA:   3'- -UCGa---UGGGCGGCUCg---CGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 103194 0.71 0.335987
Target:  5'- gAGcCUGCCCGgCGAGCGgGGguauCCgaGGCg -3'
miRNA:   3'- -UC-GAUGGGCgGCUCGCgCC----GGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 127559 0.65 0.661965
Target:  5'- cGGCUcgucguccgggagGCCCGacggaCCGucCGCGacgucGCCCUGGCg -3'
miRNA:   3'- -UCGA-------------UGGGC-----GGCucGCGC-----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 32280 0.75 0.207536
Target:  5'- aGGCgGCCCGCaugagGAGgGCGGCCUcguagUGGCa -3'
miRNA:   3'- -UCGaUGGGCGg----CUCgCGCCGGG-----ACCG- -5'
9249 3' -64.4 NC_002512.2 + 133362 0.75 0.207536
Target:  5'- cGGCUcACaCCGCCG-GCGCGGCUCccuccGGCg -3'
miRNA:   3'- -UCGA-UG-GGCGGCuCGCGCCGGGa----CCG- -5'
9249 3' -64.4 NC_002512.2 + 4084 0.74 0.2172
Target:  5'- aGGCcACCCgGCCGccCGCGGCCCggccGGCg -3'
miRNA:   3'- -UCGaUGGG-CGGCucGCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 3189 0.74 0.227247
Target:  5'- cGCUcgACgCCGCCGcgGGCGaCGGCCC-GGCg -3'
miRNA:   3'- uCGA--UG-GGCGGC--UCGC-GCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 100216 0.73 0.271413
Target:  5'- gGGCUACgCCGUCGAG-GCGGCgUCgacgGGCg -3'
miRNA:   3'- -UCGAUG-GGCGGCUCgCGCCG-GGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 136612 0.72 0.308885
Target:  5'- uAGCggGCCgCGCCcuccAGCGUGGCCUUGGa -3'
miRNA:   3'- -UCGa-UGG-GCGGc---UCGCGCCGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 46989 0.73 0.277395
Target:  5'- cGC-GCCCGCCGAGaGgGGCCgcuucuugCUGGCg -3'
miRNA:   3'- uCGaUGGGCGGCUCgCgCCGG--------GACCG- -5'
9249 3' -64.4 NC_002512.2 + 110314 0.73 0.265535
Target:  5'- aGGggACCCGCCGGGCucccGCGGUCCgcccGGUc -3'
miRNA:   3'- -UCgaUGGGCGGCUCG----CGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 26542 0.79 0.109709
Target:  5'- cGGCaGCUCGcCCGAGggcugcaagauCGCGGCCCUGGCc -3'
miRNA:   3'- -UCGaUGGGC-GGCUC-----------GCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 11671 0.73 0.283482
Target:  5'- cGCgGCCCGCCGcggcccgaGGCgGgGGCCCgaggGGCg -3'
miRNA:   3'- uCGaUGGGCGGC--------UCG-CgCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 55401 0.78 0.120841
Target:  5'- cAGCgcCCCGCCGAGCGUG-CCgCUGGUg -3'
miRNA:   3'- -UCGauGGGCGGCUCGCGCcGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 2812 0.74 0.243052
Target:  5'- cGGCgggACCCgGCgCGGGCGCGGgCCCggacgacGGCg -3'
miRNA:   3'- -UCGa--UGGG-CG-GCUCGCGCC-GGGa------CCG- -5'
9249 3' -64.4 NC_002512.2 + 31648 0.73 0.283482
Target:  5'- aGGCcguCCCggacgGCgCGGGCGCGGCCgUGGUg -3'
miRNA:   3'- -UCGau-GGG-----CG-GCUCGCGCCGGgACCG- -5'
9249 3' -64.4 NC_002512.2 + 97355 0.72 0.329052
Target:  5'- cGGCgccGCCCGCgGAGCGgGGaCCgcGGCg -3'
miRNA:   3'- -UCGa--UGGGCGgCUCGCgCCgGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 119231 0.76 0.168538
Target:  5'- cGGCUGCCCGCgguCGAGCgGCGGCuggauCCcGGCg -3'
miRNA:   3'- -UCGAUGGGCG---GCUCG-CGCCG-----GGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 99897 0.74 0.2172
Target:  5'- aGGCgcgGCCCGUCGAGgGCgccgggGGCCCgccgaagGGCg -3'
miRNA:   3'- -UCGa--UGGGCGGCUCgCG------CCGGGa------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.