miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 178 0.66 0.653476
Target:  5'- gAGgaGgCCGgaGGGCGUGggcuGCCCUGGCc -3'
miRNA:   3'- -UCgaUgGGCggCUCGCGC----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 332 0.66 0.606231
Target:  5'- cGCUcCuCCGCCG-GCGCcccGCCC-GGCu -3'
miRNA:   3'- uCGAuG-GGCGGCuCGCGc--CGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 2812 0.74 0.243052
Target:  5'- cGGCgggACCCgGCgCGGGCGCGGgCCCggacgacGGCg -3'
miRNA:   3'- -UCGa--UGGG-CG-GCUCGCGCC-GGGa------CCG- -5'
9249 3' -64.4 NC_002512.2 + 2931 0.71 0.357427
Target:  5'- cAGCUuCuuGgCCucccGCGCGGCCUUGGCg -3'
miRNA:   3'- -UCGAuGggC-GGcu--CGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 3189 0.74 0.227247
Target:  5'- cGCUcgACgCCGCCGcgGGCGaCGGCCC-GGCg -3'
miRNA:   3'- uCGA--UG-GGCGGC--UCGC-GCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 3389 0.69 0.435548
Target:  5'- cAGCaggACCCGCggcgagggGAGCGCccgGGCCCcGGCc -3'
miRNA:   3'- -UCGa--UGGGCGg-------CUCGCG---CCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 4084 0.74 0.2172
Target:  5'- aGGCcACCCgGCCGccCGCGGCCCggccGGCg -3'
miRNA:   3'- -UCGaUGGG-CGGCucGCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 4150 0.68 0.504635
Target:  5'- cGCgcCCCGaCUGAGCgagucgccGCGGCUCgcgGGCg -3'
miRNA:   3'- uCGauGGGC-GGCUCG--------CGCCGGGa--CCG- -5'
9249 3' -64.4 NC_002512.2 + 4426 0.66 0.628904
Target:  5'- cGGCUGCUgguagaccggcggggUGCCGGGCGCGGgggucGGCg -3'
miRNA:   3'- -UCGAUGG---------------GCGGCUCGCGCCggga-CCG- -5'
9249 3' -64.4 NC_002512.2 + 4657 0.66 0.625122
Target:  5'- gAGCggaggcCCCGCCG-GCGCGucgaaGCCCaGGa -3'
miRNA:   3'- -UCGau----GGGCGGCuCGCGC-----CGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 4724 0.66 0.634577
Target:  5'- uGCUGCaacgCCGCCGAcgacuGCGaCGGCUgcugUGGCa -3'
miRNA:   3'- uCGAUG----GGCGGCU-----CGC-GCCGGg---ACCG- -5'
9249 3' -64.4 NC_002512.2 + 4820 0.69 0.464272
Target:  5'- uGCUGCgggacguguugcgcgCCGCCGAggaGCGCGGCCaucgcggGGUu -3'
miRNA:   3'- uCGAUG---------------GGCGGCU---CGCGCCGGga-----CCG- -5'
9249 3' -64.4 NC_002512.2 + 6326 0.66 0.606231
Target:  5'- cGCcGCCCGCggggggacCGGGCGCGgGgCCggcgGGCc -3'
miRNA:   3'- uCGaUGGGCG--------GCUCGCGC-CgGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 7426 0.66 0.615671
Target:  5'- cGCgaggGCCgGCgCGAGguuggcCGCGGCCCgGGg -3'
miRNA:   3'- uCGa---UGGgCG-GCUC------GCGCCGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 7513 0.72 0.322223
Target:  5'- gAGCcagaGCCCGCCGGGgaagGCGGCCCcGuGCc -3'
miRNA:   3'- -UCGa---UGGGCGGCUCg---CGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 8185 0.69 0.460841
Target:  5'- uAGC-ACCCgagGCCGAGCGUcGCCg-GGCg -3'
miRNA:   3'- -UCGaUGGG---CGGCUCGCGcCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 9467 0.7 0.411076
Target:  5'- cGGCUGgCCGUaggCGGGCG-GGCCCgcgagcGGCg -3'
miRNA:   3'- -UCGAUgGGCG---GCUCGCgCCGGGa-----CCG- -5'
9249 3' -64.4 NC_002512.2 + 9759 0.66 0.644031
Target:  5'- gAGCcggACCCGCCGccccGCGUGGC---GGCu -3'
miRNA:   3'- -UCGa--UGGGCGGCu---CGCGCCGggaCCG- -5'
9249 3' -64.4 NC_002512.2 + 10104 0.67 0.596808
Target:  5'- uGUgucCCCgGCCGGGC-CGGCCgCgGGCa -3'
miRNA:   3'- uCGau-GGG-CGGCUCGcGCCGG-GaCCG- -5'
9249 3' -64.4 NC_002512.2 + 10659 0.68 0.504635
Target:  5'- gAGCacgaucccgACCuCGCCGAgGC-CGGCCC-GGCa -3'
miRNA:   3'- -UCGa--------UGG-GCGGCU-CGcGCCGGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.