miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 229735 0.66 0.606231
Target:  5'- cGCUcCuCCGCCG-GCGCcccGCCC-GGCu -3'
miRNA:   3'- uCGAuG-GGCGGCuCGCGc--CGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 229581 0.66 0.653476
Target:  5'- gAGgaGgCCGgaGGGCGUGggcuGCCCUGGCc -3'
miRNA:   3'- -UCgaUgGGCggCUCGCGC----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 227808 0.7 0.379809
Target:  5'- cGCU-CCCGCCcGGCGUGGacuccgcgcucCCgCUGGCg -3'
miRNA:   3'- uCGAuGGGCGGcUCGCGCC-----------GG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 227458 0.68 0.504635
Target:  5'- cGCUGCCgggggagagGCCGGGgGCGGCC--GGCc -3'
miRNA:   3'- uCGAUGGg--------CGGCUCgCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 227052 0.71 0.335289
Target:  5'- cAGCUGCCCGCCGucguccgGGCcCGcGCCCgcgccgGGUc -3'
miRNA:   3'- -UCGAUGGGCGGC-------UCGcGC-CGGGa-----CCG- -5'
9249 3' -64.4 NC_002512.2 + 226578 0.73 0.25409
Target:  5'- cGCUcCCCgGCCaggaGGGCGCGGCCCgGGg -3'
miRNA:   3'- uCGAuGGG-CGG----CUCGCGCCGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 226190 0.69 0.478127
Target:  5'- gAGacgGCCgCGCCGuuagcGCGCGGCCg-GGCc -3'
miRNA:   3'- -UCga-UGG-GCGGCu----CGCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 225788 0.73 0.271413
Target:  5'- aGGCUGCgCCgGCCGGGCcgcggGCGGCCgggUGGCc -3'
miRNA:   3'- -UCGAUG-GG-CGGCUCG-----CGCCGGg--ACCG- -5'
9249 3' -64.4 NC_002512.2 + 225735 0.66 0.615671
Target:  5'- cGGCgACUCGCUcagucgGGGCGCGGCCg-GGa -3'
miRNA:   3'- -UCGaUGGGCGG------CUCGCGCCGGgaCCg -5'
9249 3' -64.4 NC_002512.2 + 224968 0.73 0.283482
Target:  5'- cGuCUACCCGCUGGGCgGCGGCggcGGCg -3'
miRNA:   3'- uC-GAUGGGCGGCUCG-CGCCGggaCCG- -5'
9249 3' -64.4 NC_002512.2 + 224581 0.67 0.595867
Target:  5'- cGGCUACCCggguuacgucaggGCgCGGGaCGCGGUgCCgaccgGGCu -3'
miRNA:   3'- -UCGAUGGG-------------CG-GCUC-GCGCCG-GGa----CCG- -5'
9249 3' -64.4 NC_002512.2 + 224443 0.69 0.478127
Target:  5'- cGCUcuACgCGCCGAcGCGUGGUCUcGGUg -3'
miRNA:   3'- uCGA--UGgGCGGCU-CGCGCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 223537 0.66 0.634577
Target:  5'- cGC-GCCCGCgGccCGCGGCCCcGcGCc -3'
miRNA:   3'- uCGaUGGGCGgCucGCGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 222578 0.7 0.410275
Target:  5'- cGCgGCCCGCCGucGCGgaggaggccugucCGGCCCccggGGCc -3'
miRNA:   3'- uCGaUGGGCGGCu-CGC-------------GCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 222518 0.67 0.550129
Target:  5'- uGGCcGCCCGCCGcGGCcgccgucgcgGUGGgCCgGGCu -3'
miRNA:   3'- -UCGaUGGGCGGC-UCG----------CGCCgGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 222442 0.66 0.604345
Target:  5'- cGGCUuCCC-CCGGGcCGCGGCCaaccucgcgccGGCc -3'
miRNA:   3'- -UCGAuGGGcGGCUC-GCGCCGGga---------CCG- -5'
9249 3' -64.4 NC_002512.2 + 222369 0.66 0.653476
Target:  5'- gGGCcGCCUuccCCG-GCG-GGCUCUGGCu -3'
miRNA:   3'- -UCGaUGGGc--GGCuCGCgCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 222167 0.67 0.568692
Target:  5'- cGCUAuCCCGacgccuacucCCGGGcCGCGGCC--GGCg -3'
miRNA:   3'- uCGAU-GGGC----------GGCUC-GCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 221686 0.66 0.625122
Target:  5'- cGCggacACCCGCCcGGCGacgcuCGGCCUcgGGUg -3'
miRNA:   3'- uCGa---UGGGCGGcUCGC-----GCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 221455 0.68 0.504635
Target:  5'- gGGCgcggucguccgACCgGCCGcgguGCGCGuuCCUGGCg -3'
miRNA:   3'- -UCGa----------UGGgCGGCu---CGCGCcgGGACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.