Results 1 - 20 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9249 | 3' | -64.4 | NC_002512.2 | + | 229735 | 0.66 | 0.606231 |
Target: 5'- cGCUcCuCCGCCG-GCGCcccGCCC-GGCu -3' miRNA: 3'- uCGAuG-GGCGGCuCGCGc--CGGGaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 229581 | 0.66 | 0.653476 |
Target: 5'- gAGgaGgCCGgaGGGCGUGggcuGCCCUGGCc -3' miRNA: 3'- -UCgaUgGGCggCUCGCGC----CGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 227808 | 0.7 | 0.379809 |
Target: 5'- cGCU-CCCGCCcGGCGUGGacuccgcgcucCCgCUGGCg -3' miRNA: 3'- uCGAuGGGCGGcUCGCGCC-----------GG-GACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 227458 | 0.68 | 0.504635 |
Target: 5'- cGCUGCCgggggagagGCCGGGgGCGGCC--GGCc -3' miRNA: 3'- uCGAUGGg--------CGGCUCgCGCCGGgaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 227052 | 0.71 | 0.335289 |
Target: 5'- cAGCUGCCCGCCGucguccgGGCcCGcGCCCgcgccgGGUc -3' miRNA: 3'- -UCGAUGGGCGGC-------UCGcGC-CGGGa-----CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 226578 | 0.73 | 0.25409 |
Target: 5'- cGCUcCCCgGCCaggaGGGCGCGGCCCgGGg -3' miRNA: 3'- uCGAuGGG-CGG----CUCGCGCCGGGaCCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 226190 | 0.69 | 0.478127 |
Target: 5'- gAGacgGCCgCGCCGuuagcGCGCGGCCg-GGCc -3' miRNA: 3'- -UCga-UGG-GCGGCu----CGCGCCGGgaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 225788 | 0.73 | 0.271413 |
Target: 5'- aGGCUGCgCCgGCCGGGCcgcggGCGGCCgggUGGCc -3' miRNA: 3'- -UCGAUG-GG-CGGCUCG-----CGCCGGg--ACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 225735 | 0.66 | 0.615671 |
Target: 5'- cGGCgACUCGCUcagucgGGGCGCGGCCg-GGa -3' miRNA: 3'- -UCGaUGGGCGG------CUCGCGCCGGgaCCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 224968 | 0.73 | 0.283482 |
Target: 5'- cGuCUACCCGCUGGGCgGCGGCggcGGCg -3' miRNA: 3'- uC-GAUGGGCGGCUCG-CGCCGggaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 224581 | 0.67 | 0.595867 |
Target: 5'- cGGCUACCCggguuacgucaggGCgCGGGaCGCGGUgCCgaccgGGCu -3' miRNA: 3'- -UCGAUGGG-------------CG-GCUC-GCGCCG-GGa----CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 224443 | 0.69 | 0.478127 |
Target: 5'- cGCUcuACgCGCCGAcGCGUGGUCUcGGUg -3' miRNA: 3'- uCGA--UGgGCGGCU-CGCGCCGGGaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 223537 | 0.66 | 0.634577 |
Target: 5'- cGC-GCCCGCgGccCGCGGCCCcGcGCc -3' miRNA: 3'- uCGaUGGGCGgCucGCGCCGGGaC-CG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 222578 | 0.7 | 0.410275 |
Target: 5'- cGCgGCCCGCCGucGCGgaggaggccugucCGGCCCccggGGCc -3' miRNA: 3'- uCGaUGGGCGGCu-CGC-------------GCCGGGa---CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 222518 | 0.67 | 0.550129 |
Target: 5'- uGGCcGCCCGCCGcGGCcgccgucgcgGUGGgCCgGGCu -3' miRNA: 3'- -UCGaUGGGCGGC-UCG----------CGCCgGGaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 222442 | 0.66 | 0.604345 |
Target: 5'- cGGCUuCCC-CCGGGcCGCGGCCaaccucgcgccGGCc -3' miRNA: 3'- -UCGAuGGGcGGCUC-GCGCCGGga---------CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 222369 | 0.66 | 0.653476 |
Target: 5'- gGGCcGCCUuccCCG-GCG-GGCUCUGGCu -3' miRNA: 3'- -UCGaUGGGc--GGCuCGCgCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 222167 | 0.67 | 0.568692 |
Target: 5'- cGCUAuCCCGacgccuacucCCGGGcCGCGGCC--GGCg -3' miRNA: 3'- uCGAU-GGGC----------GGCUC-GCGCCGGgaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 221686 | 0.66 | 0.625122 |
Target: 5'- cGCggacACCCGCCcGGCGacgcuCGGCCUcgGGUg -3' miRNA: 3'- uCGa---UGGGCGGcUCGC-----GCCGGGa-CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 221455 | 0.68 | 0.504635 |
Target: 5'- gGGCgcggucguccgACCgGCCGcgguGCGCGuuCCUGGCg -3' miRNA: 3'- -UCGa----------UGGgCGGCu---CGCGCcgGGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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