miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 54628 1.11 0.00063
Target:  5'- cAGCUACCCGCCGAGCGCGGCCCUGGCg -3'
miRNA:   3'- -UCGAUGGGCGGCUCGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 147557 0.88 0.027871
Target:  5'- cGCUACCCGCCGGG-GCGGCCCgcGGCc -3'
miRNA:   3'- uCGAUGGGCGGCUCgCGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 128841 0.84 0.051034
Target:  5'- cAGCUGCaCCGCuCGGGCGCcgcgcgGGCCCUGGUg -3'
miRNA:   3'- -UCGAUG-GGCG-GCUCGCG------CCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 169548 0.79 0.109709
Target:  5'- cGGCUGCCCGgCG-GCGUGGCCUUcgccGGCg -3'
miRNA:   3'- -UCGAUGGGCgGCuCGCGCCGGGA----CCG- -5'
9249 3' -64.4 NC_002512.2 + 26542 0.79 0.109709
Target:  5'- cGGCaGCUCGcCCGAGggcugcaagauCGCGGCCCUGGCc -3'
miRNA:   3'- -UCGaUGGGC-GGCUC-----------GCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 219208 0.79 0.117964
Target:  5'- cGCUGCaCUGCCGGGC-CGGCCUcGGCg -3'
miRNA:   3'- uCGAUG-GGCGGCUCGcGCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 55401 0.78 0.120841
Target:  5'- cAGCgcCCCGCCGAGCGUG-CCgCUGGUg -3'
miRNA:   3'- -UCGauGGGCGGCUCGCGCcGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 118945 0.77 0.13952
Target:  5'- cGCUGgcCCCGgUguucuccaccgaGAGCGCGGCCCUGGUg -3'
miRNA:   3'- uCGAU--GGGCgG------------CUCGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 148248 0.77 0.146314
Target:  5'- cAGCaACgCGCCGAgccuggacgugGCGaCGGCCCUGGCc -3'
miRNA:   3'- -UCGaUGgGCGGCU-----------CGC-GCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 119231 0.76 0.168538
Target:  5'- cGGCUGCCCGCgguCGAGCgGCGGCuggauCCcGGCg -3'
miRNA:   3'- -UCGAUGGGCG---GCUCG-CGCCG-----GGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 133580 0.76 0.172524
Target:  5'- cGGCgaccgGCCCGCCcgcGGCgGCGGCCCgcGGCa -3'
miRNA:   3'- -UCGa----UGGGCGGc--UCG-CGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 92672 0.76 0.172524
Target:  5'- cGGCcGCCCgcGCCGGGCGCGccGCCCaccgGGCg -3'
miRNA:   3'- -UCGaUGGG--CGGCUCGCGC--CGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 220964 0.75 0.202845
Target:  5'- cGCcgACCCgGCCGAG-GCcGCCCUGGCc -3'
miRNA:   3'- uCGa-UGGG-CGGCUCgCGcCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 133362 0.75 0.207536
Target:  5'- cGGCUcACaCCGCCG-GCGCGGCUCccuccGGCg -3'
miRNA:   3'- -UCGA-UG-GGCGGCuCGCGCCGGGa----CCG- -5'
9249 3' -64.4 NC_002512.2 + 32280 0.75 0.207536
Target:  5'- aGGCgGCCCGCaugagGAGgGCGGCCUcguagUGGCa -3'
miRNA:   3'- -UCGaUGGGCGg----CUCgCGCCGGG-----ACCG- -5'
9249 3' -64.4 NC_002512.2 + 218731 0.75 0.212321
Target:  5'- cGGacgACCCGUCGAGCGCGuGUCC-GGCc -3'
miRNA:   3'- -UCga-UGGGCGGCUCGCGC-CGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 209949 0.74 0.216708
Target:  5'- uGCUGCUCGaCCGGGCGCGgGUCCUcaaggucgccaacGGCu -3'
miRNA:   3'- uCGAUGGGC-GGCUCGCGC-CGGGA-------------CCG- -5'
9249 3' -64.4 NC_002512.2 + 4084 0.74 0.2172
Target:  5'- aGGCcACCCgGCCGccCGCGGCCCggccGGCg -3'
miRNA:   3'- -UCGaUGGG-CGGCucGCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 99897 0.74 0.2172
Target:  5'- aGGCgcgGCCCGUCGAGgGCgccgggGGCCCgccgaagGGCg -3'
miRNA:   3'- -UCGa--UGGGCGGCUCgCG------CCGGGa------CCG- -5'
9249 3' -64.4 NC_002512.2 + 211739 0.74 0.222175
Target:  5'- cGGCcugGCCCG-CGA-CGCGGCCCgGGCg -3'
miRNA:   3'- -UCGa--UGGGCgGCUcGCGCCGGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.