miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 127559 0.65 0.661965
Target:  5'- cGGCUcgucguccgggagGCCCGacggaCCGucCGCGacgucGCCCUGGCg -3'
miRNA:   3'- -UCGA-------------UGGGC-----GGCucGCGC-----CGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 90292 0.66 0.634577
Target:  5'- cGCggaccggGCCCGaUUGAGCGCGGagCUGaGCg -3'
miRNA:   3'- uCGa------UGGGC-GGCUCGCGCCggGAC-CG- -5'
9249 3' -64.4 NC_002512.2 + 145630 0.66 0.615671
Target:  5'- cGCUGCCCGCCuuccGCGUcgagaugccgGGCCC-GcGCu -3'
miRNA:   3'- uCGAUGGGCGGcu--CGCG----------CCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 225735 0.66 0.615671
Target:  5'- cGGCgACUCGCUcagucgGGGCGCGGCCg-GGa -3'
miRNA:   3'- -UCGaUGGGCGG------CUCGCGCCGGgaCCg -5'
9249 3' -64.4 NC_002512.2 + 158757 0.66 0.622286
Target:  5'- uGGCcGCCCuGCUGcgcgagaagauccuGGCGCugguGGCCCggGGCg -3'
miRNA:   3'- -UCGaUGGG-CGGC--------------UCGCG----CCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 153323 0.66 0.624177
Target:  5'- cGCUGgggugguUCCGCUGGGC-CGGUCCgGGUn -3'
miRNA:   3'- uCGAU-------GGGCGGCUCGcGCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 217107 0.66 0.625122
Target:  5'- cAGCggggGCgCCGCCGAGUccuGCGGC---GGCa -3'
miRNA:   3'- -UCGa---UG-GGCGGCUCG---CGCCGggaCCG- -5'
9249 3' -64.4 NC_002512.2 + 98332 0.66 0.625122
Target:  5'- aAGUcGCUC-CCGAGCGCgacgaacuGGCCgUUGGCg -3'
miRNA:   3'- -UCGaUGGGcGGCUCGCG--------CCGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 101696 0.66 0.625122
Target:  5'- cGGU--CCCGCCG---GCGGCCCgcucGGCg -3'
miRNA:   3'- -UCGauGGGCGGCucgCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 103439 0.66 0.625122
Target:  5'- cGCgucguCCCGguCCGAGCGCGgGUCCgaggacgcGGCu -3'
miRNA:   3'- uCGau---GGGC--GGCUCGCGC-CGGGa-------CCG- -5'
9249 3' -64.4 NC_002512.2 + 221686 0.66 0.625122
Target:  5'- cGCggacACCCGCCcGGCGacgcuCGGCCUcgGGUg -3'
miRNA:   3'- uCGa---UGGGCGGcUCGC-----GCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 126485 0.66 0.653476
Target:  5'- cGCgucGCCCggauccccggcGuuGGGCGCGaGCCuCUGGUc -3'
miRNA:   3'- uCGa--UGGG-----------CggCUCGCGC-CGG-GACCG- -5'
9249 3' -64.4 NC_002512.2 + 113151 0.66 0.634577
Target:  5'- gGGC-GCCgGCCucGcCGCGGCCg-GGCg -3'
miRNA:   3'- -UCGaUGGgCGGcuC-GCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 186102 0.66 0.634577
Target:  5'- cGGCU-CCUGCU--GUGCGGCCCcGaGCu -3'
miRNA:   3'- -UCGAuGGGCGGcuCGCGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 223537 0.66 0.634577
Target:  5'- cGC-GCCCGCgGccCGCGGCCCcGcGCc -3'
miRNA:   3'- uCGaUGGGCGgCucGCGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 206556 0.66 0.644031
Target:  5'- --gUACaCCGCCG---GCGGCCCggGGCg -3'
miRNA:   3'- ucgAUG-GGCGGCucgCGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 217691 0.66 0.652532
Target:  5'- gGGCUGgcucuucCCCGCCG-GCGUcgacgaGGUCCgcuucaggGGCg -3'
miRNA:   3'- -UCGAU-------GGGCGGCuCGCG------CCGGGa-------CCG- -5'
9249 3' -64.4 NC_002512.2 + 150732 0.66 0.653476
Target:  5'- uGGaCUuCCCGUCGGcccgcGCGCGGCCCa--- -3'
miRNA:   3'- -UC-GAuGGGCGGCU-----CGCGCCGGGaccg -5'
9249 3' -64.4 NC_002512.2 + 213211 0.66 0.653476
Target:  5'- uGGuCUGggaCCGCCGGGuCGUGGCCgCcaacGGCg -3'
miRNA:   3'- -UC-GAUg--GGCGGCUC-GCGCCGG-Ga---CCG- -5'
9249 3' -64.4 NC_002512.2 + 147862 0.66 0.653476
Target:  5'- cGGCgcgACCCcgacCCGGGCGaCGGCUCgccGCg -3'
miRNA:   3'- -UCGa--UGGGc---GGCUCGC-GCCGGGac-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.