miRNA display CGI


Results 21 - 40 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 11671 0.73 0.283482
Target:  5'- cGCgGCCCGCCGcggcccgaGGCgGgGGCCCgaggGGCg -3'
miRNA:   3'- uCGaUGGGCGGC--------UCG-CgCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 12580 0.67 0.550129
Target:  5'- cGCUGgCggaGCCGAucaucucccggcGCGCGGUCCgcaUGGCg -3'
miRNA:   3'- uCGAUgGg--CGGCU------------CGCGCCGGG---ACCG- -5'
9249 3' -64.4 NC_002512.2 + 13432 0.7 0.419139
Target:  5'- cGGCUACCUggGCUucucgauggaGAGgGCGGCggcgagCCUGGCg -3'
miRNA:   3'- -UCGAUGGG--CGG----------CUCgCGCCG------GGACCG- -5'
9249 3' -64.4 NC_002512.2 + 16520 0.7 0.395243
Target:  5'- uAGC-ACUguCGCCGccAGCGCGGgcguccCCCUGGCu -3'
miRNA:   3'- -UCGaUGG--GCGGC--UCGCGCC------GGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 16734 0.66 0.625122
Target:  5'- gAGCUgACCCGCCaugagcGGGUGCGaGCgccaguaCUGGUa -3'
miRNA:   3'- -UCGA-UGGGCGG------CUCGCGC-CGg------GACCG- -5'
9249 3' -64.4 NC_002512.2 + 17850 0.69 0.469443
Target:  5'- cAGCU-CCUcCCGGGCGCGGUgCUcGCg -3'
miRNA:   3'- -UCGAuGGGcGGCUCGCGCCGgGAcCG- -5'
9249 3' -64.4 NC_002512.2 + 18521 0.66 0.644031
Target:  5'- cAGCaUGCCgCGCCGGGCGgucaGGCCgc-GCg -3'
miRNA:   3'- -UCG-AUGG-GCGGCUCGCg---CCGGgacCG- -5'
9249 3' -64.4 NC_002512.2 + 18879 0.66 0.606231
Target:  5'- uAGCUgaagaggauggACaCGCCGuacuGCGCGGCCaCgcaGGCg -3'
miRNA:   3'- -UCGA-----------UGgGCGGCu---CGCGCCGG-Ga--CCG- -5'
9249 3' -64.4 NC_002512.2 + 20633 0.67 0.596808
Target:  5'- aGGUccgGuuCGCCGAGCG-GGCCCgGGa -3'
miRNA:   3'- -UCGa--UggGCGGCUCGCgCCGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 21098 0.7 0.387476
Target:  5'- gGGCga-CCGCCGucucAGaCGCGGaCCUUGGCc -3'
miRNA:   3'- -UCGaugGGCGGC----UC-GCGCC-GGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 21214 0.7 0.395243
Target:  5'- cAGCgGCCC-CCGGGaCGCcGCCCggGGCg -3'
miRNA:   3'- -UCGaUGGGcGGCUC-GCGcCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 21314 0.71 0.350175
Target:  5'- cGCUGCgCGUCGAGCuCGGCCUgacGCa -3'
miRNA:   3'- uCGAUGgGCGGCUCGcGCCGGGac-CG- -5'
9249 3' -64.4 NC_002512.2 + 22153 0.68 0.503741
Target:  5'- gAGCguccCCCGCCGA-CGauggacuCGGCgCUGGCg -3'
miRNA:   3'- -UCGau--GGGCGGCUcGC-------GCCGgGACCG- -5'
9249 3' -64.4 NC_002512.2 + 22774 0.7 0.40311
Target:  5'- cAGCUgguGCCCGaCGAGCuGCGcGCCCgcuaccacaagGGCg -3'
miRNA:   3'- -UCGA---UGGGCgGCUCG-CGC-CGGGa----------CCG- -5'
9249 3' -64.4 NC_002512.2 + 24235 0.7 0.411076
Target:  5'- aGGCgucggGCCCGCCGAcgGCGUccCCCgcgGGCa -3'
miRNA:   3'- -UCGa----UGGGCGGCU--CGCGccGGGa--CCG- -5'
9249 3' -64.4 NC_002512.2 + 25080 0.66 0.615671
Target:  5'- cGC-GCCC-CCGGGaCGCGGaccuCCCgGGCg -3'
miRNA:   3'- uCGaUGGGcGGCUC-GCGCC----GGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 26505 0.67 0.550129
Target:  5'- cGCUGCCguuccugaUGCUGAGCaaccGCGGC-CUGGUn -3'
miRNA:   3'- uCGAUGG--------GCGGCUCG----CGCCGgGACCG- -5'
9249 3' -64.4 NC_002512.2 + 26542 0.79 0.109709
Target:  5'- cGGCaGCUCGcCCGAGggcugcaagauCGCGGCCCUGGCc -3'
miRNA:   3'- -UCGaUGGGC-GGCUC-----------GCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 27332 0.71 0.343028
Target:  5'- cGCaggagAUCCGCCGAcUGCGaGCCCUGGg -3'
miRNA:   3'- uCGa----UGGGCGGCUcGCGC-CGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 28049 0.71 0.375259
Target:  5'- gAGCUGCCgGCCGcggaaggagcccccgGGCGCGGCggagacGGCg -3'
miRNA:   3'- -UCGAUGGgCGGC---------------UCGCGCCGgga---CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.