Results 21 - 40 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9249 | 3' | -64.4 | NC_002512.2 | + | 11671 | 0.73 | 0.283482 |
Target: 5'- cGCgGCCCGCCGcggcccgaGGCgGgGGCCCgaggGGCg -3' miRNA: 3'- uCGaUGGGCGGC--------UCG-CgCCGGGa---CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 12580 | 0.67 | 0.550129 |
Target: 5'- cGCUGgCggaGCCGAucaucucccggcGCGCGGUCCgcaUGGCg -3' miRNA: 3'- uCGAUgGg--CGGCU------------CGCGCCGGG---ACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 13432 | 0.7 | 0.419139 |
Target: 5'- cGGCUACCUggGCUucucgauggaGAGgGCGGCggcgagCCUGGCg -3' miRNA: 3'- -UCGAUGGG--CGG----------CUCgCGCCG------GGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 16520 | 0.7 | 0.395243 |
Target: 5'- uAGC-ACUguCGCCGccAGCGCGGgcguccCCCUGGCu -3' miRNA: 3'- -UCGaUGG--GCGGC--UCGCGCC------GGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 16734 | 0.66 | 0.625122 |
Target: 5'- gAGCUgACCCGCCaugagcGGGUGCGaGCgccaguaCUGGUa -3' miRNA: 3'- -UCGA-UGGGCGG------CUCGCGC-CGg------GACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 17850 | 0.69 | 0.469443 |
Target: 5'- cAGCU-CCUcCCGGGCGCGGUgCUcGCg -3' miRNA: 3'- -UCGAuGGGcGGCUCGCGCCGgGAcCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 18521 | 0.66 | 0.644031 |
Target: 5'- cAGCaUGCCgCGCCGGGCGgucaGGCCgc-GCg -3' miRNA: 3'- -UCG-AUGG-GCGGCUCGCg---CCGGgacCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 18879 | 0.66 | 0.606231 |
Target: 5'- uAGCUgaagaggauggACaCGCCGuacuGCGCGGCCaCgcaGGCg -3' miRNA: 3'- -UCGA-----------UGgGCGGCu---CGCGCCGG-Ga--CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 20633 | 0.67 | 0.596808 |
Target: 5'- aGGUccgGuuCGCCGAGCG-GGCCCgGGa -3' miRNA: 3'- -UCGa--UggGCGGCUCGCgCCGGGaCCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21098 | 0.7 | 0.387476 |
Target: 5'- gGGCga-CCGCCGucucAGaCGCGGaCCUUGGCc -3' miRNA: 3'- -UCGaugGGCGGC----UC-GCGCC-GGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21214 | 0.7 | 0.395243 |
Target: 5'- cAGCgGCCC-CCGGGaCGCcGCCCggGGCg -3' miRNA: 3'- -UCGaUGGGcGGCUC-GCGcCGGGa-CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21314 | 0.71 | 0.350175 |
Target: 5'- cGCUGCgCGUCGAGCuCGGCCUgacGCa -3' miRNA: 3'- uCGAUGgGCGGCUCGcGCCGGGac-CG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 22153 | 0.68 | 0.503741 |
Target: 5'- gAGCguccCCCGCCGA-CGauggacuCGGCgCUGGCg -3' miRNA: 3'- -UCGau--GGGCGGCUcGC-------GCCGgGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 22774 | 0.7 | 0.40311 |
Target: 5'- cAGCUgguGCCCGaCGAGCuGCGcGCCCgcuaccacaagGGCg -3' miRNA: 3'- -UCGA---UGGGCgGCUCG-CGC-CGGGa----------CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 24235 | 0.7 | 0.411076 |
Target: 5'- aGGCgucggGCCCGCCGAcgGCGUccCCCgcgGGCa -3' miRNA: 3'- -UCGa----UGGGCGGCU--CGCGccGGGa--CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 25080 | 0.66 | 0.615671 |
Target: 5'- cGC-GCCC-CCGGGaCGCGGaccuCCCgGGCg -3' miRNA: 3'- uCGaUGGGcGGCUC-GCGCC----GGGaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 26505 | 0.67 | 0.550129 |
Target: 5'- cGCUGCCguuccugaUGCUGAGCaaccGCGGC-CUGGUn -3' miRNA: 3'- uCGAUGG--------GCGGCUCG----CGCCGgGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 26542 | 0.79 | 0.109709 |
Target: 5'- cGGCaGCUCGcCCGAGggcugcaagauCGCGGCCCUGGCc -3' miRNA: 3'- -UCGaUGGGC-GGCUC-----------GCGCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 27332 | 0.71 | 0.343028 |
Target: 5'- cGCaggagAUCCGCCGAcUGCGaGCCCUGGg -3' miRNA: 3'- uCGa----UGGGCGGCUcGCGC-CGGGACCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 28049 | 0.71 | 0.375259 |
Target: 5'- gAGCUGCCgGCCGcggaaggagcccccgGGCGCGGCggagacGGCg -3' miRNA: 3'- -UCGAUGGgCGGC---------------UCGCGCCGgga---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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