miRNA display CGI


Results 21 - 40 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 54628 1.11 0.00063
Target:  5'- cAGCUACCCGCCGAGCGCGGCCCUGGCg -3'
miRNA:   3'- -UCGAUGGGCGGCUCGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 46407 0.7 0.387476
Target:  5'- aGGCgGCCCGC--AGCaCGGCCUUGGUg -3'
miRNA:   3'- -UCGaUGGGCGgcUCGcGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 21098 0.7 0.387476
Target:  5'- gGGCga-CCGCCGucucAGaCGCGGaCCUUGGCc -3'
miRNA:   3'- -UCGaugGGCGGC----UC-GCGCC-GGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 27332 0.71 0.343028
Target:  5'- cGCaggagAUCCGCCGAcUGCGaGCCCUGGg -3'
miRNA:   3'- uCGa----UGGGCGGCUcGCGC-CGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 101966 0.73 0.271413
Target:  5'- cGCggGCCCGCCG-GCG-GGCUCgUGGCc -3'
miRNA:   3'- uCGa-UGGGCGGCuCGCgCCGGG-ACCG- -5'
9249 3' -64.4 NC_002512.2 + 130232 0.7 0.395243
Target:  5'- gAGCUGCCgGggaucggcUCGGGCGCcgGGCCCUccgagGGCg -3'
miRNA:   3'- -UCGAUGGgC--------GGCUCGCG--CCGGGA-----CCG- -5'
9249 3' -64.4 NC_002512.2 + 135094 0.7 0.387476
Target:  5'- cGuCUACCgCGUCGuGCGC-GCCCUGGa -3'
miRNA:   3'- uC-GAUGG-GCGGCuCGCGcCGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 3189 0.74 0.227247
Target:  5'- cGCUcgACgCCGCCGcgGGCGaCGGCCC-GGCg -3'
miRNA:   3'- uCGA--UG-GGCGGC--UCGC-GCCGGGaCCG- -5'
9249 3' -64.4 NC_002512.2 + 2931 0.71 0.357427
Target:  5'- cAGCUuCuuGgCCucccGCGCGGCCUUGGCg -3'
miRNA:   3'- -UCGAuGggC-GGcu--CGCGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 59515 0.71 0.350175
Target:  5'- cAGCgcggCGCCGcGCaCGGCCCUGGCc -3'
miRNA:   3'- -UCGauggGCGGCuCGcGCCGGGACCG- -5'
9249 3' -64.4 NC_002512.2 + 99897 0.74 0.2172
Target:  5'- aGGCgcgGCCCGUCGAGgGCgccgggGGCCCgccgaagGGCg -3'
miRNA:   3'- -UCGa--UGGGCGGCUCgCG------CCGGGa------CCG- -5'
9249 3' -64.4 NC_002512.2 + 133362 0.75 0.207536
Target:  5'- cGGCUcACaCCGCCG-GCGCGGCUCccuccGGCg -3'
miRNA:   3'- -UCGA-UG-GGCGGCuCGCGCCGGGa----CCG- -5'
9249 3' -64.4 NC_002512.2 + 22774 0.7 0.40311
Target:  5'- cAGCUgguGCCCGaCGAGCuGCGcGCCCgcuaccacaagGGCg -3'
miRNA:   3'- -UCGA---UGGGCgGCUCG-CGC-CGGGa----------CCG- -5'
9249 3' -64.4 NC_002512.2 + 21214 0.7 0.395243
Target:  5'- cAGCgGCCC-CCGGGaCGCcGCCCggGGCg -3'
miRNA:   3'- -UCGaUGGGcGGCUC-GCGcCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 133994 0.7 0.387476
Target:  5'- cGGC-ACCCGgccgggcgaccUCGAgauccucggcGCGCGGCCCUGGg -3'
miRNA:   3'- -UCGaUGGGC-----------GGCU----------CGCGCCGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 31648 0.73 0.283482
Target:  5'- aGGCcguCCCggacgGCgCGGGCGCGGCCgUGGUg -3'
miRNA:   3'- -UCGau-GGG-----CG-GCUCGCGCCGGgACCG- -5'
9249 3' -64.4 NC_002512.2 + 46989 0.73 0.277395
Target:  5'- cGC-GCCCGCCGAGaGgGGCCgcuucuugCUGGCg -3'
miRNA:   3'- uCGaUGGGCGGCUCgCgCCGG--------GACCG- -5'
9249 3' -64.4 NC_002512.2 + 32280 0.75 0.207536
Target:  5'- aGGCgGCCCGCaugagGAGgGCGGCCUcguagUGGCa -3'
miRNA:   3'- -UCGaUGGGCGg----CUCgCGCCGGG-----ACCG- -5'
9249 3' -64.4 NC_002512.2 + 21314 0.71 0.350175
Target:  5'- cGCUGCgCGUCGAGCuCGGCCUgacGCa -3'
miRNA:   3'- uCGAUGgGCGGCUCGcGCCGGGac-CG- -5'
9249 3' -64.4 NC_002512.2 + 29797 0.71 0.364784
Target:  5'- cGGCgacCCCGCgaCGGGCGCGGgCUUcGGCu -3'
miRNA:   3'- -UCGau-GGGCG--GCUCGCGCCgGGA-CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.