Results 21 - 40 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9249 | 3' | -64.4 | NC_002512.2 | + | 54628 | 1.11 | 0.00063 |
Target: 5'- cAGCUACCCGCCGAGCGCGGCCCUGGCg -3' miRNA: 3'- -UCGAUGGGCGGCUCGCGCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 46407 | 0.7 | 0.387476 |
Target: 5'- aGGCgGCCCGC--AGCaCGGCCUUGGUg -3' miRNA: 3'- -UCGaUGGGCGgcUCGcGCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21098 | 0.7 | 0.387476 |
Target: 5'- gGGCga-CCGCCGucucAGaCGCGGaCCUUGGCc -3' miRNA: 3'- -UCGaugGGCGGC----UC-GCGCC-GGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 27332 | 0.71 | 0.343028 |
Target: 5'- cGCaggagAUCCGCCGAcUGCGaGCCCUGGg -3' miRNA: 3'- uCGa----UGGGCGGCUcGCGC-CGGGACCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 101966 | 0.73 | 0.271413 |
Target: 5'- cGCggGCCCGCCG-GCG-GGCUCgUGGCc -3' miRNA: 3'- uCGa-UGGGCGGCuCGCgCCGGG-ACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 130232 | 0.7 | 0.395243 |
Target: 5'- gAGCUGCCgGggaucggcUCGGGCGCcgGGCCCUccgagGGCg -3' miRNA: 3'- -UCGAUGGgC--------GGCUCGCG--CCGGGA-----CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 135094 | 0.7 | 0.387476 |
Target: 5'- cGuCUACCgCGUCGuGCGC-GCCCUGGa -3' miRNA: 3'- uC-GAUGG-GCGGCuCGCGcCGGGACCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 3189 | 0.74 | 0.227247 |
Target: 5'- cGCUcgACgCCGCCGcgGGCGaCGGCCC-GGCg -3' miRNA: 3'- uCGA--UG-GGCGGC--UCGC-GCCGGGaCCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 2931 | 0.71 | 0.357427 |
Target: 5'- cAGCUuCuuGgCCucccGCGCGGCCUUGGCg -3' miRNA: 3'- -UCGAuGggC-GGcu--CGCGCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 59515 | 0.71 | 0.350175 |
Target: 5'- cAGCgcggCGCCGcGCaCGGCCCUGGCc -3' miRNA: 3'- -UCGauggGCGGCuCGcGCCGGGACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 99897 | 0.74 | 0.2172 |
Target: 5'- aGGCgcgGCCCGUCGAGgGCgccgggGGCCCgccgaagGGCg -3' miRNA: 3'- -UCGa--UGGGCGGCUCgCG------CCGGGa------CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 133362 | 0.75 | 0.207536 |
Target: 5'- cGGCUcACaCCGCCG-GCGCGGCUCccuccGGCg -3' miRNA: 3'- -UCGA-UG-GGCGGCuCGCGCCGGGa----CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 22774 | 0.7 | 0.40311 |
Target: 5'- cAGCUgguGCCCGaCGAGCuGCGcGCCCgcuaccacaagGGCg -3' miRNA: 3'- -UCGA---UGGGCgGCUCG-CGC-CGGGa----------CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21214 | 0.7 | 0.395243 |
Target: 5'- cAGCgGCCC-CCGGGaCGCcGCCCggGGCg -3' miRNA: 3'- -UCGaUGGGcGGCUC-GCGcCGGGa-CCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 133994 | 0.7 | 0.387476 |
Target: 5'- cGGC-ACCCGgccgggcgaccUCGAgauccucggcGCGCGGCCCUGGg -3' miRNA: 3'- -UCGaUGGGC-----------GGCU----------CGCGCCGGGACCg -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 31648 | 0.73 | 0.283482 |
Target: 5'- aGGCcguCCCggacgGCgCGGGCGCGGCCgUGGUg -3' miRNA: 3'- -UCGau-GGG-----CG-GCUCGCGCCGGgACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 46989 | 0.73 | 0.277395 |
Target: 5'- cGC-GCCCGCCGAGaGgGGCCgcuucuugCUGGCg -3' miRNA: 3'- uCGaUGGGCGGCUCgCgCCGG--------GACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 32280 | 0.75 | 0.207536 |
Target: 5'- aGGCgGCCCGCaugagGAGgGCGGCCUcguagUGGCa -3' miRNA: 3'- -UCGaUGGGCGg----CUCgCGCCGGG-----ACCG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 21314 | 0.71 | 0.350175 |
Target: 5'- cGCUGCgCGUCGAGCuCGGCCUgacGCa -3' miRNA: 3'- uCGAUGgGCGGCUCGcGCCGGGac-CG- -5' |
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9249 | 3' | -64.4 | NC_002512.2 | + | 29797 | 0.71 | 0.364784 |
Target: 5'- cGGCgacCCCGCgaCGGGCGCGGgCUUcGGCu -3' miRNA: 3'- -UCGau-GGGCG--GCUCGCGCCgGGA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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