miRNA display CGI


Results 21 - 40 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 3' -64.4 NC_002512.2 + 119568 0.66 0.644031
Target:  5'- aGGUcacgUACUCGCUGAGCGUGauGCgCUGGa -3'
miRNA:   3'- -UCG----AUGGGCGGCUCGCGC--CGgGACCg -5'
9249 3' -64.4 NC_002512.2 + 206556 0.66 0.644031
Target:  5'- --gUACaCCGCCG---GCGGCCCggGGCg -3'
miRNA:   3'- ucgAUG-GGCGGCucgCGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 97435 0.66 0.634577
Target:  5'- cGCUccccggACCCGCCgccgggGAGCGCaaccGGUUCUGGa -3'
miRNA:   3'- uCGA------UGGGCGG------CUCGCG----CCGGGACCg -5'
9249 3' -64.4 NC_002512.2 + 4724 0.66 0.634577
Target:  5'- uGCUGCaacgCCGCCGAcgacuGCGaCGGCUgcugUGGCa -3'
miRNA:   3'- uCGAUG----GGCGGCU-----CGC-GCCGGg---ACCG- -5'
9249 3' -64.4 NC_002512.2 + 223537 0.66 0.634577
Target:  5'- cGC-GCCCGCgGccCGCGGCCCcGcGCc -3'
miRNA:   3'- uCGaUGGGCGgCucGCGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 90292 0.66 0.634577
Target:  5'- cGCggaccggGCCCGaUUGAGCGCGGagCUGaGCg -3'
miRNA:   3'- uCGa------UGGGC-GGCUCGCGCCggGAC-CG- -5'
9249 3' -64.4 NC_002512.2 + 113151 0.66 0.634577
Target:  5'- gGGC-GCCgGCCucGcCGCGGCCg-GGCg -3'
miRNA:   3'- -UCGaUGGgCGGcuC-GCGCCGGgaCCG- -5'
9249 3' -64.4 NC_002512.2 + 186102 0.66 0.634577
Target:  5'- cGGCU-CCUGCU--GUGCGGCCCcGaGCu -3'
miRNA:   3'- -UCGAuGGGCGGcuCGCGCCGGGaC-CG- -5'
9249 3' -64.4 NC_002512.2 + 126561 0.66 0.633632
Target:  5'- gGGCUACgCCGcCCGGGCcuCGGCCgUccuguccuacgacGGCc -3'
miRNA:   3'- -UCGAUG-GGC-GGCUCGc-GCCGGgA-------------CCG- -5'
9249 3' -64.4 NC_002512.2 + 4426 0.66 0.628904
Target:  5'- cGGCUGCUgguagaccggcggggUGCCGGGCGCGGgggucGGCg -3'
miRNA:   3'- -UCGAUGG---------------GCGGCUCGCGCCggga-CCG- -5'
9249 3' -64.4 NC_002512.2 + 83806 0.66 0.625122
Target:  5'- cGCgucggGCgCGCCGgcGGCgGCGGCUCcgGGCc -3'
miRNA:   3'- uCGa----UGgGCGGC--UCG-CGCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 42889 0.66 0.625122
Target:  5'- cGCguacagGCCCGCCGcguagcccAGCGCaccgccaggacGGCCCgGGa -3'
miRNA:   3'- uCGa-----UGGGCGGC--------UCGCG-----------CCGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 16734 0.66 0.625122
Target:  5'- gAGCUgACCCGCCaugagcGGGUGCGaGCgccaguaCUGGUa -3'
miRNA:   3'- -UCGA-UGGGCGG------CUCGCGC-CGg------GACCG- -5'
9249 3' -64.4 NC_002512.2 + 4657 0.66 0.625122
Target:  5'- gAGCggaggcCCCGCCG-GCGCGucgaaGCCCaGGa -3'
miRNA:   3'- -UCGau----GGGCGGCuCGCGC-----CGGGaCCg -5'
9249 3' -64.4 NC_002512.2 + 79609 0.66 0.625122
Target:  5'- gGGCgGCagCGCCGGGuCGCGGUaCUcGGCg -3'
miRNA:   3'- -UCGaUGg-GCGGCUC-GCGCCGgGA-CCG- -5'
9249 3' -64.4 NC_002512.2 + 221686 0.66 0.625122
Target:  5'- cGCggacACCCGCCcGGCGacgcuCGGCCUcgGGUg -3'
miRNA:   3'- uCGa---UGGGCGGcUCGC-----GCCGGGa-CCG- -5'
9249 3' -64.4 NC_002512.2 + 217107 0.66 0.625122
Target:  5'- cAGCggggGCgCCGCCGAGUccuGCGGC---GGCa -3'
miRNA:   3'- -UCGa---UG-GGCGGCUCG---CGCCGggaCCG- -5'
9249 3' -64.4 NC_002512.2 + 103439 0.66 0.625122
Target:  5'- cGCgucguCCCGguCCGAGCGCGgGUCCgaggacgcGGCu -3'
miRNA:   3'- uCGau---GGGC--GGCUCGCGC-CGGGa-------CCG- -5'
9249 3' -64.4 NC_002512.2 + 101696 0.66 0.625122
Target:  5'- cGGU--CCCGCCG---GCGGCCCgcucGGCg -3'
miRNA:   3'- -UCGauGGGCGGCucgCGCCGGGa---CCG- -5'
9249 3' -64.4 NC_002512.2 + 98332 0.66 0.625122
Target:  5'- aAGUcGCUC-CCGAGCGCgacgaacuGGCCgUUGGCg -3'
miRNA:   3'- -UCGaUGGGcGGCUCGCG--------CCGG-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.