Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9249 | 5' | -57.2 | NC_002512.2 | + | 54662 | 1.09 | 0.003605 |
Target: 5'- gUCACCAAGAUGGACCGGCGGACGGUGg -3' miRNA: 3'- -AGUGGUUCUACCUGGCCGCCUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 109840 | 0.77 | 0.372794 |
Target: 5'- cCGCCGGGcgucggGGACCGGCGuggcGGCGGUGg -3' miRNA: 3'- aGUGGUUCua----CCUGGCCGC----CUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 33180 | 0.77 | 0.396734 |
Target: 5'- --gUCAAGAgccggucGGGCUGGCGGACGGUGc -3' miRNA: 3'- aguGGUUCUa------CCUGGCCGCCUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 125150 | 0.77 | 0.404932 |
Target: 5'- cCGCgGGGGccccggGGGCgGGCGGACGGUGa -3' miRNA: 3'- aGUGgUUCUa-----CCUGgCCGCCUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 128187 | 0.76 | 0.438761 |
Target: 5'- gUCGCCGAGcgGGccGCCGGCGGGacCGGg- -3' miRNA: 3'- -AGUGGUUCuaCC--UGGCCGCCU--GCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 135011 | 0.76 | 0.465164 |
Target: 5'- uUCGuCCuggAGGAUucGGGCCGGCGGACGGa- -3' miRNA: 3'- -AGU-GG---UUCUA--CCUGGCCGCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 227988 | 0.74 | 0.520287 |
Target: 5'- gCGCCGAGGgccgaGGGCCGGagcCGGACGGg- -3' miRNA: 3'- aGUGGUUCUa----CCUGGCC---GCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 81939 | 0.74 | 0.539239 |
Target: 5'- aCGgCGAGGgcggagGGGCCGGCGcGCGGUGa -3' miRNA: 3'- aGUgGUUCUa-----CCUGGCCGCcUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 70672 | 0.74 | 0.54497 |
Target: 5'- -gGCCGGGAggggacuucccggGGACCGGcCGGGCGGg- -3' miRNA: 3'- agUGGUUCUa------------CCUGGCC-GCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 16269 | 0.73 | 0.577787 |
Target: 5'- -gGCCAAGAgucagGGACCGGaCGcGACGGc- -3' miRNA: 3'- agUGGUUCUa----CCUGGCC-GC-CUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 217779 | 0.73 | 0.587528 |
Target: 5'- gUCGCCGGGGUcGcGGCCGGCuGGCGGa- -3' miRNA: 3'- -AGUGGUUCUA-C-CUGGCCGcCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 184545 | 0.73 | 0.597298 |
Target: 5'- -aGCCGGcGGcgcGGGCCGGCGGACGGc- -3' miRNA: 3'- agUGGUU-CUa--CCUGGCCGCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 100130 | 0.73 | 0.616904 |
Target: 5'- gUCACCGucGUGGACggCGGCGGACcGGUc -3' miRNA: 3'- -AGUGGUucUACCUG--GCCGCCUG-CCAc -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 54759 | 0.72 | 0.656186 |
Target: 5'- aCACCAAGAcG---UGGCGGGCGGUGg -3' miRNA: 3'- aGUGGUUCUaCcugGCCGCCUGCCAC- -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 228469 | 0.72 | 0.663044 |
Target: 5'- aCGCCGAGggGGACCGaggggaccgaagacGCGGAgGGg- -3' miRNA: 3'- aGUGGUUCuaCCUGGC--------------CGCCUgCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 227217 | 0.72 | 0.66598 |
Target: 5'- -gACCAGGAggcggcGGACCgggaggcgcGGCGGACGGg- -3' miRNA: 3'- agUGGUUCUa-----CCUGG---------CCGCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 6341 | 0.72 | 0.675749 |
Target: 5'- -gACCGGGcgcgGGGCCGGCGGgccGCGGg- -3' miRNA: 3'- agUGGUUCua--CCUGGCCGCC---UGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 8114 | 0.72 | 0.675749 |
Target: 5'- -aGCUAAGAUGGAUgGgGCGGAUGGc- -3' miRNA: 3'- agUGGUUCUACCUGgC-CGCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 56365 | 0.71 | 0.704828 |
Target: 5'- -gGCCccgacGGAcGGAUCGGCGGACGGc- -3' miRNA: 3'- agUGGu----UCUaCCUGGCCGCCUGCCac -5' |
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9249 | 5' | -57.2 | NC_002512.2 | + | 83608 | 0.71 | 0.714418 |
Target: 5'- gUCGCCGGGGuUGGACaCGGCGuucaGGCGGc- -3' miRNA: 3'- -AGUGGUUCU-ACCUG-GCCGC----CUGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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