miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 54662 1.09 0.003605
Target:  5'- gUCACCAAGAUGGACCGGCGGACGGUGg -3'
miRNA:   3'- -AGUGGUUCUACCUGGCCGCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 101710 0.69 0.805423
Target:  5'- aCGCCGAGAcu--CCGGCGGACGa-- -3'
miRNA:   3'- aGUGGUUCUaccuGGCCGCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 79733 0.69 0.819669
Target:  5'- -aGCgAGGAcGGGCUGGCGGACgccgacacgagcggGGUGa -3'
miRNA:   3'- agUGgUUCUaCCUGGCCGCCUG--------------CCAC- -5'
9249 5' -57.2 NC_002512.2 + 91958 0.66 0.943205
Target:  5'- aUCGCCAGGgcGGAgCGGCacguccGGAgGGc- -3'
miRNA:   3'- -AGUGGUUCuaCCUgGCCG------CCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 81939 0.74 0.539239
Target:  5'- aCGgCGAGGgcggagGGGCCGGCGcGCGGUGa -3'
miRNA:   3'- aGUgGUUCUa-----CCUGGCCGCcUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 70672 0.74 0.54497
Target:  5'- -gGCCGGGAggggacuucccggGGACCGGcCGGGCGGg- -3'
miRNA:   3'- agUGGUUCUa------------CCUGGCC-GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 100130 0.73 0.616904
Target:  5'- gUCACCGucGUGGACggCGGCGGACcGGUc -3'
miRNA:   3'- -AGUGGUucUACCUG--GCCGCCUG-CCAc -5'
9249 5' -57.2 NC_002512.2 + 54759 0.72 0.656186
Target:  5'- aCACCAAGAcG---UGGCGGGCGGUGg -3'
miRNA:   3'- aGUGGUUCUaCcugGCCGCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 83608 0.71 0.714418
Target:  5'- gUCGCCGGGGuUGGACaCGGCGuucaGGCGGc- -3'
miRNA:   3'- -AGUGGUUCU-ACCUG-GCCGC----CUGCCac -5'
9249 5' -57.2 NC_002512.2 + 22162 0.69 0.796844
Target:  5'- cCGCCGAcGAUGGACuCGGCGcuGGCGaUGg -3'
miRNA:   3'- aGUGGUU-CUACCUG-GCCGC--CUGCcAC- -5'
9249 5' -57.2 NC_002512.2 + 49996 0.7 0.752052
Target:  5'- aCGCCAAGAagaagagGGAgCCGGUGcacgucgucguGACGGUGg -3'
miRNA:   3'- aGUGGUUCUa------CCU-GGCCGC-----------CUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 56365 0.71 0.704828
Target:  5'- -gGCCccgacGGAcGGAUCGGCGGACGGc- -3'
miRNA:   3'- agUGGu----UCUaCCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 125150 0.77 0.404932
Target:  5'- cCGCgGGGGccccggGGGCgGGCGGACGGUGa -3'
miRNA:   3'- aGUGgUUCUa-----CCUGgCCGCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 2086 0.7 0.770317
Target:  5'- aCGCCGGGcgGGAgCgGGCGGuACGGc- -3'
miRNA:   3'- aGUGGUUCuaCCU-GgCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 128187 0.76 0.438761
Target:  5'- gUCGCCGAGcgGGccGCCGGCGGGacCGGg- -3'
miRNA:   3'- -AGUGGUUCuaCC--UGGCCGCCU--GCCac -5'
9249 5' -57.2 NC_002512.2 + 6341 0.72 0.675749
Target:  5'- -gACCGGGcgcgGGGCCGGCGGgccGCGGg- -3'
miRNA:   3'- agUGGUUCua--CCUGGCCGCC---UGCCac -5'
9249 5' -57.2 NC_002512.2 + 128664 0.69 0.796844
Target:  5'- -uGCCGGcGccGGAacCCGGCGGACGGg- -3'
miRNA:   3'- agUGGUU-CuaCCU--GGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 102317 0.69 0.805423
Target:  5'- aUCGCCGAGcggcUGGGCCGGCuc-CGGUa -3'
miRNA:   3'- -AGUGGUUCu---ACCUGGCCGccuGCCAc -5'
9249 5' -57.2 NC_002512.2 + 135011 0.76 0.465164
Target:  5'- uUCGuCCuggAGGAUucGGGCCGGCGGACGGa- -3'
miRNA:   3'- -AGU-GG---UUCUA--CCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 16269 0.73 0.577787
Target:  5'- -gGCCAAGAgucagGGACCGGaCGcGACGGc- -3'
miRNA:   3'- agUGGUUCUa----CCUGGCC-GC-CUGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.