miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9249 5' -57.2 NC_002512.2 + 147 0.68 0.846
Target:  5'- -aGCCGGGcgGGgcGCCGGCGGA-GGa- -3'
miRNA:   3'- agUGGUUCuaCC--UGGCCGCCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 176 0.67 0.91144
Target:  5'- gCGCCGGGAgGGACgGGggcgagaaggggccCGGGCGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGgCC--------------GCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 2086 0.7 0.770317
Target:  5'- aCGCCGGGcgGGAgCgGGCGGuACGGc- -3'
miRNA:   3'- aGUGGUUCuaCCU-GgCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 6341 0.72 0.675749
Target:  5'- -gACCGGGcgcgGGGCCGGCGGgccGCGGg- -3'
miRNA:   3'- agUGGUUCua--CCUGGCCGCC---UGCCac -5'
9249 5' -57.2 NC_002512.2 + 6448 0.68 0.882121
Target:  5'- gCGCCGAGAcagGGGUCGGCcGGcACGGUc -3'
miRNA:   3'- aGUGGUUCUa--CCUGGCCG-CC-UGCCAc -5'
9249 5' -57.2 NC_002512.2 + 6529 0.69 0.838217
Target:  5'- aCGCC-----GGAUCGGCGGGCGGa- -3'
miRNA:   3'- aGUGGuucuaCCUGGCCGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 8114 0.72 0.675749
Target:  5'- -aGCUAAGAUGGAUgGgGCGGAUGGc- -3'
miRNA:   3'- agUGGUUCUACCUGgC-CGCCUGCCac -5'
9249 5' -57.2 NC_002512.2 + 9215 0.66 0.943205
Target:  5'- gUCGCCcAGcacGACgCGGCGGGCcaGGUGg -3'
miRNA:   3'- -AGUGGuUCuacCUG-GCCGCCUG--CCAC- -5'
9249 5' -57.2 NC_002512.2 + 16269 0.73 0.577787
Target:  5'- -gGCCAAGAgucagGGACCGGaCGcGACGGc- -3'
miRNA:   3'- agUGGUUCUa----CCUGGCC-GC-CUGCCac -5'
9249 5' -57.2 NC_002512.2 + 22162 0.69 0.796844
Target:  5'- cCGCCGAcGAUGGACuCGGCGcuGGCGaUGg -3'
miRNA:   3'- aGUGGUU-CUACCUG-GCCGC--CUGCcAC- -5'
9249 5' -57.2 NC_002512.2 + 27853 0.66 0.929168
Target:  5'- -gACCGcGAgccGGACCGGCGGG-GGa- -3'
miRNA:   3'- agUGGUuCUa--CCUGGCCGCCUgCCac -5'
9249 5' -57.2 NC_002512.2 + 33180 0.77 0.396734
Target:  5'- --gUCAAGAgccggucGGGCUGGCGGACGGUGc -3'
miRNA:   3'- aguGGUUCUa------CCUGGCCGCCUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 33630 0.68 0.856595
Target:  5'- cUCGCCGAGGcgagaggcgcgcgcGGGCgCGGCGGACaGGg- -3'
miRNA:   3'- -AGUGGUUCUa-------------CCUG-GCCGCCUG-CCac -5'
9249 5' -57.2 NC_002512.2 + 34076 0.7 0.752052
Target:  5'- -gACCGAGaAUGGACCGGCGcGGCc--- -3'
miRNA:   3'- agUGGUUC-UACCUGGCCGC-CUGccac -5'
9249 5' -57.2 NC_002512.2 + 36922 0.67 0.907373
Target:  5'- -gACCAAGcgGGAggacCCGGgGGACGa-- -3'
miRNA:   3'- agUGGUUCuaCCU----GGCCgCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 45199 0.66 0.934066
Target:  5'- -gACCg----GGACCGGCGGcGCGGa- -3'
miRNA:   3'- agUGGuucuaCCUGGCCGCC-UGCCac -5'
9249 5' -57.2 NC_002512.2 + 46994 0.69 0.822138
Target:  5'- cCGCCGAGAgGGGCCgcuucuugcuGGCGG-CGGa- -3'
miRNA:   3'- aGUGGUUCUaCCUGG----------CCGCCuGCCac -5'
9249 5' -57.2 NC_002512.2 + 49791 0.68 0.882121
Target:  5'- -gGCCGAGGUGGACgCcaucGCGGACGa-- -3'
miRNA:   3'- agUGGUUCUACCUG-Gc---CGCCUGCcac -5'
9249 5' -57.2 NC_002512.2 + 49996 0.7 0.752052
Target:  5'- aCGCCAAGAagaagagGGAgCCGGUGcacgucgucguGACGGUGg -3'
miRNA:   3'- aGUGGUUCUa------CCU-GGCCGC-----------CUGCCAC- -5'
9249 5' -57.2 NC_002512.2 + 53222 0.66 0.943205
Target:  5'- gUC-CCAGGA-GGcgcGCUGGCGGGagcUGGUGa -3'
miRNA:   3'- -AGuGGUUCUaCC---UGGCCGCCU---GCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.