miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 118038 0.66 0.674747
Target:  5'- aCCaagGAGGCCgUGGcccguGCCCGGGCUCGa -3'
miRNA:   3'- gGGg--CUCUGGgGCCc----UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 226151 0.66 0.656579
Target:  5'- cUCCCGAuccACCCUGGGGuacgagUCCG-ACCCGg -3'
miRNA:   3'- -GGGGCUc--UGGGGCCCU------GGGCcUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 195560 0.66 0.656579
Target:  5'- cUCCCGGGuCgCCGGGuCCCugaaguGGACCg- -3'
miRNA:   3'- -GGGGCUCuGgGGCCCuGGG------CCUGGgc -5'
9252 5' -65.7 NC_002512.2 + 192187 0.66 0.656579
Target:  5'- gUCCUGc-GCCgCGgcuggggaGGACCCGGACCCu -3'
miRNA:   3'- -GGGGCucUGGgGC--------CCUGGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 191794 0.66 0.656579
Target:  5'- uCgUCGucuuuCCCCGGGACaCCGGGCaCUGa -3'
miRNA:   3'- -GgGGCucu--GGGGCCCUG-GGCCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 93808 0.66 0.656579
Target:  5'- gUCCGAGccggccCCCCGG---CCGGACCCa -3'
miRNA:   3'- gGGGCUCu-----GGGGCCcugGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 41788 0.66 0.655669
Target:  5'- aUCCCGucGCCgauugauCCGGGuaGCCCGGaagGCCCa -3'
miRNA:   3'- -GGGGCucUGG-------GGCCC--UGGGCC---UGGGc -5'
9252 5' -65.7 NC_002512.2 + 87607 0.66 0.647469
Target:  5'- cCCCCGucGACgCCGuccccGGCCCGGACgacgaCCGg -3'
miRNA:   3'- -GGGGCu-CUGgGGCc----CUGGGCCUG-----GGC- -5'
9252 5' -65.7 NC_002512.2 + 202267 0.66 0.647469
Target:  5'- gCCCgGAGcgucucuccgcGCUgUGGGACCgGGGCgCCGu -3'
miRNA:   3'- -GGGgCUC-----------UGGgGCCCUGGgCCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 222156 0.66 0.664765
Target:  5'- cCCCCGAGGaccgcuaUCCCGacgccuacuCCCGGGCCgCGg -3'
miRNA:   3'- -GGGGCUCU-------GGGGCccu------GGGCCUGG-GC- -5'
9252 5' -65.7 NC_002512.2 + 51027 0.66 0.665674
Target:  5'- aUCUCGAgguucagaguGACCCCGuGaagagaGCUCGGGCCCGg -3'
miRNA:   3'- -GGGGCU----------CUGGGGCcC------UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 105092 0.66 0.665674
Target:  5'- -gUCGGGucgacgugucuCCCCGGGuCCCGGcaGCCCu -3'
miRNA:   3'- ggGGCUCu----------GGGGCCCuGGGCC--UGGGc -5'
9252 5' -65.7 NC_002512.2 + 216589 0.66 0.674747
Target:  5'- -gCC-AGGCCCUGGGugucgAUCCGGACCg- -3'
miRNA:   3'- ggGGcUCUGGGGCCC-----UGGGCCUGGgc -5'
9252 5' -65.7 NC_002512.2 + 116933 0.66 0.674747
Target:  5'- gCCCGAcGACUCgGGGcucgACCgGGGCgCCa -3'
miRNA:   3'- gGGGCU-CUGGGgCCC----UGGgCCUG-GGc -5'
9252 5' -65.7 NC_002512.2 + 177106 0.66 0.673841
Target:  5'- uCUCCGcGACCaggagguCCGGGugcGCCagcaGGGCCCGc -3'
miRNA:   3'- -GGGGCuCUGG-------GGCCC---UGGg---CCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 210214 0.66 0.665674
Target:  5'- gUCCGAGA---CGGaGACgCGGACCCGa -3'
miRNA:   3'- gGGGCUCUgggGCC-CUGgGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 209249 0.66 0.665674
Target:  5'- gUCCCG-GGCCCgcuCGGcGAaCCGGACCUc -3'
miRNA:   3'- -GGGGCuCUGGG---GCC-CUgGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 192813 0.66 0.665674
Target:  5'- aCCCGGGGCgaucgcaCCGGGGCCagguGGACgaGg -3'
miRNA:   3'- gGGGCUCUGg------GGCCCUGGg---CCUGggC- -5'
9252 5' -65.7 NC_002512.2 + 138037 0.66 0.665674
Target:  5'- uUCCGAGccgacauCCUgCGGGA-CCGGAUCCGg -3'
miRNA:   3'- gGGGCUCu------GGG-GCCCUgGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 174410 0.66 0.665674
Target:  5'- uUCCCGcGGCgCCGGGGCCUccgucgGGGCUa- -3'
miRNA:   3'- -GGGGCuCUGgGGCCCUGGG------CCUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.