miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9252 5' -65.7 NC_002512.2 + 55621 1.1 0.000844
Target:  5'- cCCCCGAGACCCCGGGACCCGGACCCGg -3'
miRNA:   3'- -GGGGCUCUGGGGCCCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 127525 0.73 0.266014
Target:  5'- gCUCCaGGACCuCCGGacgaccgacGCCCGGACCCGg -3'
miRNA:   3'- -GGGGcUCUGG-GGCCc--------UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 80841 0.73 0.277468
Target:  5'- gCCCCGuAGgcgaGCCUCGGGACgCgGGGCUCGg -3'
miRNA:   3'- -GGGGC-UC----UGGGGCCCUG-GgCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 118038 0.66 0.674747
Target:  5'- aCCaagGAGGCCgUGGcccguGCCCGGGCUCGa -3'
miRNA:   3'- gGGg--CUCUGGgGCCc----UGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 118649 0.78 0.143098
Target:  5'- gCCCGAcGCUCCGGGcGCCCGGccGCCCGu -3'
miRNA:   3'- gGGGCUcUGGGGCCC-UGGGCC--UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 105654 0.77 0.15291
Target:  5'- aCUCCGAGuaccucaGCCCCGGGACCUGGAacaCGa -3'
miRNA:   3'- -GGGGCUC-------UGGGGCCCUGGGCCUgg-GC- -5'
9252 5' -65.7 NC_002512.2 + 72825 0.77 0.156789
Target:  5'- aCCCCG-GACCCCGGGACgcccgccuugCCGGGUCCu -3'
miRNA:   3'- -GGGGCuCUGGGGCCCUG----------GGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 7282 0.76 0.175562
Target:  5'- gCgCGAGGCCCCGGGGgCCGGACa-- -3'
miRNA:   3'- gGgGCUCUGGGGCCCUgGGCCUGggc -5'
9252 5' -65.7 NC_002512.2 + 70503 0.76 0.187765
Target:  5'- gCCCCGAcGCCgCGGGACCCGcGAaugggacgcCCCGa -3'
miRNA:   3'- -GGGGCUcUGGgGCCCUGGGC-CU---------GGGC- -5'
9252 5' -65.7 NC_002512.2 + 16877 0.74 0.254946
Target:  5'- aCCUCGAGaggGCCCCGGG-CCCGacGGCCgCGg -3'
miRNA:   3'- -GGGGCUC---UGGGGCCCuGGGC--CUGG-GC- -5'
9252 5' -65.7 NC_002512.2 + 25075 0.75 0.22893
Target:  5'- gCCgCCGcGcCCCCGGGACgCGGACCUc -3'
miRNA:   3'- -GG-GGCuCuGGGGCCCUGgGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 105087 0.76 0.183616
Target:  5'- cUCCCG--GCUCCGucagcuGGACCCGGACCCGg -3'
miRNA:   3'- -GGGGCucUGGGGC------CCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 103497 0.8 0.103385
Target:  5'- gCCCGGGGCCCCGGGcgcucuCCCGGGCggCCa -3'
miRNA:   3'- gGGGCUCUGGGGCCCu-----GGGCCUG--GGc -5'
9252 5' -65.7 NC_002512.2 + 12114 0.74 0.244259
Target:  5'- -gCCGcGACCCCGGcGACggggaCGGGCCCGg -3'
miRNA:   3'- ggGGCuCUGGGGCC-CUGg----GCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 3524 0.8 0.105838
Target:  5'- aCCCGAG-CCCgCGGGGCCCGaaGCCCGg -3'
miRNA:   3'- gGGGCUCuGGG-GCCCUGGGCc-UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 127625 0.76 0.175562
Target:  5'- -gCCGAGAUggacgacgCCC-GGACCCGGGCCCGg -3'
miRNA:   3'- ggGGCUCUG--------GGGcCCUGGGCCUGGGC- -5'
9252 5' -65.7 NC_002512.2 + 100325 0.74 0.244259
Target:  5'- gUCCCGGcGCCUCGGGACUggCGGGCgCCGg -3'
miRNA:   3'- -GGGGCUcUGGGGCCCUGG--GCCUG-GGC- -5'
9252 5' -65.7 NC_002512.2 + 130133 0.73 0.266014
Target:  5'- gCCCGGGguggugucgcgGCCgCGGGGCCCGGcggcgggccgGCCCGc -3'
miRNA:   3'- gGGGCUC-----------UGGgGCCCUGGGCC----------UGGGC- -5'
9252 5' -65.7 NC_002512.2 + 79679 0.79 0.121745
Target:  5'- uCCCCGGcGGCCuCCGGGuuCCCGGAUCCc -3'
miRNA:   3'- -GGGGCU-CUGG-GGCCCu-GGGCCUGGGc -5'
9252 5' -65.7 NC_002512.2 + 51645 0.77 0.153259
Target:  5'- aCCCgGAGAccgcgccguCCCCGGaGACCCuGGACCUGu -3'
miRNA:   3'- -GGGgCUCU---------GGGGCC-CUGGG-CCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.